YEASTOHNOLOG             package:PCpheno             R Documentation

_L_i_s_t _o_f _o_h_n_o_l_o_g _g_e_n_e _p_a_i_r_s _f_r_o_m _B_y_r_n_e, _K._P _a_n_d _W_o_l_f_e, _K._H (_2_0_0_5)

_D_e_s_c_r_i_p_t_i_o_n:

     List of 551 paralogous _Saccharomyces cerevisiae_ gene pairs
     formed by Whole Genome Duplication (WGD) or ohnolog pairs.

_U_s_a_g_e:

     data(YEASTOHNOLOG)

_F_o_r_m_a_t:

     'YEASTOHNOLOG' is a dataframe of 551 paired genes. The first two
     columns are the ohnolog gene pairs (systematic gene names). The
     third column is an index (numeric) of the  rate of sequence
     evolution. The last two columns define the chromosome location.

_D_e_t_a_i_l_s:

_G_e_n_e_1 _G_e_n_e_2 Systematic gene names of the ohnolog pairs

_K_a Coefficient that represents the extent of non-synonymous sequence
     divergence between each ohnolog pairs (Yang and Nielsen, 2000).
     The highest is the coefficient the fastest the 2 elements of a
     pair have diverged.

_C_h_r_G_1 _C_h_r_G_2 Chromosome location of the each element of a pair. Note
     that repeat of the same chromosome locations shared by a set of
     pairs define a block of duplication.

_A_u_t_h_o_r(_s):

     N. LeMeur

_S_o_u_r_c_e:

     Byrne,KP and Wolfe KH (2005), Table2 of supplementary information
     and Scerevisiae_genome.tab file, chromosome location, from YGOB
     <URL: http://wolfe.gen.tcd.ie/ygob/> (last update 03/20/06)

_R_e_f_e_r_e_n_c_e_s:

     Byrne KP, Wolfe KH. (2005) The Yeast Gene Order Browser: combining
     curated homology and syntenic context reveals gene fate in
     polyploid species. Genome Res. 15(10):1456-61.  PMID: 16169922

_E_x_a_m_p_l_e_s:

     data(YEASTOHNOLOG)
     str(YEASTOHNOLOG)

