CGHcall                 Calling aberrations for array CGH tumor
                        profiles.
CGHcall-package         Calling aberrations for array CGH tumor
                        profiles.
Wilting                 Cervical cancer arrayCGH data
cghCall                 Class to contain and describe called array
                        comparative genomic hybridization data.
cghRaw                  Class to contain and describe raw or normalized
                        array comparative genomic hybridization data.
cghSeg                  Class to contain and describe segmented array
                        comparative genomic hybridization data.
chromosomes             Retrieve feature position data from cgh
                        objects.
copynumber              Retrieve copynumber data from cgh objects.
make_cghRaw             Convert a dataframe or textfile to an object of
                        class cghRaw.
normalize               Normalization and cellularity adjustment for
                        arrayCGH data.
plot.summary            Visualization of aCGH profiles.
preprocess              Preprocess arrayCGH data
probloss                Retrieve call probabilities from a cghCall
                        object.
segmentData             Breakpoint detection for arrayCGH data.
