Entry: AlgebraicRule-class
Aliases: AlgebraicRule-class
Keywords: classes
Description: SBML type "AlgebraicRule"
URL: ../../../library/rsbml/html/AlgebraicRule-class.html

Entry: AssignmentRule-class
Aliases: AssignmentRule-class type,AssignmentRule-method type type<-,AssignmentRule-method type<- variable,AssignmentRule-method variable<-,AssignmentRule-method
Keywords: classes
Description: SBML type "AssignmentRule"
URL: ../../../library/rsbml/html/AssignmentRule-class.html

Entry: BoundingBox-class
Aliases: BoundingBox-class position,BoundingBox-method position position<-,BoundingBox-method position<- id<-,BoundingBox-method id,BoundingBox-method dimensions<-,BoundingBox-method dimensions,BoundingBox-method
Keywords: classes
Description: SBML type "BoundingBox"
URL: ../../../library/rsbml/html/BoundingBox-class.html

Entry: Compartment-class
Aliases: Compartment-class outside,Compartment-method outside outside<-,Compartment-method outside<- size,Compartment-method size size<-,Compartment-method size<- spatialDimensions,Compartment-method spatialDimensions spatialDimensions<-,Compartment-method spatialDimensions<- id<-,Compartment-method id,Compartment-method name<-,Compartment-method name,Compartment-method constant<-,Compartment-method constant,Compartment-method units<-,Compartment-method units,Compartment-method
Keywords: classes
Description: SBML type "Compartment"
URL: ../../../library/rsbml/html/Compartment-class.html

Entry: CompartmentGlyph-class
Aliases: CompartmentGlyph-class compartment,CompartmentGlyph-method compartment<-,CompartmentGlyph-method
Keywords: classes
Description: SBML type "CompartmentGlyph"
URL: ../../../library/rsbml/html/CompartmentGlyph-class.html

Entry: CompartmentType-class
Aliases: CompartmentType-class id,CompartmentType-method id<-,CompartmentType-method name,CompartmentType-method name<-,CompartmentType-method
Keywords: classes
Description: SBML Type "CompartmentType"
URL: ../../../library/rsbml/html/CompartmentType-class.html

Entry: CompartmentVolumeRule-class
Aliases: CompartmentVolumeRule-class compartment,CompartmentVolumeRule-method compartment<-,CompartmentVolumeRule-method
Keywords: classes
Description: SBML type "CompartmentVolumeRule"
URL: ../../../library/rsbml/html/CompartmentVolumeRule-class.html

Entry: Constraint-class
Aliases: Constraint-class math,Constraint-method math<-,Constraint-method message,Constraint-method message<-,Constraint-method message<-
Keywords: classes
Description: SBML Type "Constraint"
URL: ../../../library/rsbml/html/Constraint-class.html

Entry: CubicBezier-class
Aliases: CubicBezier-class basePoint1,CubicBezier-method basePoint1 basePoint1<-,CubicBezier-method basePoint1<- basePoint2,CubicBezier-method basePoint2 basePoint2<-,CubicBezier-method basePoint2<-
Keywords: classes
Description: SBML type "CubicBezier"
URL: ../../../library/rsbml/html/CubicBezier-class.html

Entry: Curve-class
Aliases: Curve-class curveSegments,Curve-method curveSegments curveSegments<-,Curve-method curveSegments<-
Keywords: classes
Description: SBML type "Curve"
URL: ../../../library/rsbml/html/Curve-class.html

Entry: Delay-class
Aliases: Delay-class math,Delay-method math<-,Delay-method
Keywords: classes
Description: SBML Type "Delay"
URL: ../../../library/rsbml/html/Delay-class.html

Entry: Dimensions-class
Aliases: Dimensions-class depth,Dimensions-method depth depth<-,Dimensions-method depth<- height,Dimensions-method height height<-,Dimensions-method height<- width,Dimensions-method width width<-,Dimensions-method width<-
Keywords: classes
Description: SBML type "Dimensions"
URL: ../../../library/rsbml/html/Dimensions-class.html

Entry: Event-class
Aliases: Event-class delay,Event-method delay delay<-,Event-method delay<- eventAssignments,Event-method eventAssignments eventAssignments<-,Event-method eventAssignments<- trigger,Event-method trigger trigger<-,Event-method trigger<- id<-,Event-method id,Event-method name<-,Event-method name,Event-method timeUnits<-,Event-method timeUnits,Event-method
Keywords: classes
Description: SBML type "Event"
URL: ../../../library/rsbml/html/Event-class.html

Entry: EventAssignment-class
Aliases: EventAssignment-class variable,EventAssignment-method variable<-,EventAssignment-method math,EventAssignment-method math<-,EventAssignment-method
Keywords: classes
Description: SBML type "EventAssignment"
URL: ../../../library/rsbml/html/EventAssignment-class.html

Entry: FunctionDefinition-class
Aliases: FunctionDefinition-class id<-,FunctionDefinition-method id,FunctionDefinition-method name<-,FunctionDefinition-method name,FunctionDefinition-method math,FunctionDefinition-method math<-,FunctionDefinition-method
Keywords: classes
Description: SBML type "FunctionDefinition"
URL: ../../../library/rsbml/html/FunctionDefinition-class.html

Entry: GraphicalObject-class
Aliases: GraphicalObject-class boundingBox,GraphicalObject-method boundingBox boundingBox<-,GraphicalObject-method boundingBox<- id<-,GraphicalObject-method id,GraphicalObject-method
Keywords: classes
Description: SBML type "GraphicalObject"
URL: ../../../library/rsbml/html/GraphicalObject-class.html

Entry: InitialAssignment-class
Aliases: symbol symbol<- InitialAssignment-class math,InitialAssignment-method math<-,InitialAssignment-method symbol,InitialAssignment-method symbol<-,InitialAssignment-method
Keywords: classes
Description: SBML Type "InitialAssignment"
URL: ../../../library/rsbml/html/InitialAssignment-class.html

Entry: KineticLaw-class
Aliases: KineticLaw-class math,KineticLaw-method math math<-,KineticLaw-method math<- substanceUnits,KineticLaw-method substanceUnits substanceUnits<-,KineticLaw-method substanceUnits<- timeUnits,KineticLaw-method timeUnits timeUnits<-,KineticLaw-method timeUnits<- parameters,KineticLaw-method parameters<-,KineticLaw-method
Keywords: classes
Description: SBML type "KineticLaw"
URL: ../../../library/rsbml/html/KineticLaw-class.html

Entry: Layout-class
Aliases: Layout-class additionalGraphicalObjects,Layout-method additionalGraphicalObjects additionalGraphicalObjects<-,Layout-method additionalGraphicalObjects<- compartmentGlyphs,Layout-method compartmentGlyphs compartmentGlyphs<-,Layout-method compartmentGlyphs<- dimensions,Layout-method dimensions dimensions<-,Layout-method dimensions<- reactionGlyphs,Layout-method reactionGlyphs reactionGlyphs<-,Layout-method reactionGlyphs<- speciesGlyphs,Layout-method speciesGlyphs speciesGlyphs<-,Layout-method speciesGlyphs<- textGlyphs,Layout-method textGlyphs textGlyphs<-,Layout-method textGlyphs<- id,Layout-method id<-,Layout-method
Keywords: classes
Description: SBML type "Layout"
URL: ../../../library/rsbml/html/Layout-class.html

Entry: LineSegment-class
Aliases: LineSegment-class end,LineSegment-method end end<-,LineSegment-method end<- start,LineSegment-method start start<-,LineSegment-method start<-
Keywords: classes
Description: SBML type "LineSegment"
URL: ../../../library/rsbml/html/LineSegment-class.html

Entry: Model-class
Aliases: Model-class compartments,Model-method compartments compartments<-,Model-method compartments<- events,Model-method events events<-,Model-method events<- functionDefinitions,Model-method functionDefinitions functionDefinitions<-,Model-method functionDefinitions<- layouts,Model-method layouts layouts<-,Model-method layouts<- parameters,Model-method parameters parameters<-,Model-method parameters<- reactions,Model-method reactions reactions<-,Model-method reactions<- rules,Model-method rules rules<-,Model-method rules<- unitDefinitions,Model-method unitDefinitions unitDefinitions<-,Model-method unitDefinitions<- compartmentTypes compartmentTypes<- constraints constraints<- initialAssignments initialAssignments<- speciesTypes speciesTypes<- id,Model-method id<-,Model-method name,Model-method name<-,Model-method species,Model-method species<-,Model-method speciesTypes,Model-method speciesTypes<-,Model-method compartmentTypes,Model-method compartmentTypes<-,Model-method constraints,Model-method constraints<-,Model-method initialAssignments,Model-method initialAssignments<-,Model-method
Keywords: classes
Description: SBML type "Model"
URL: ../../../library/rsbml/html/Model-class.html

Entry: ModifierSpeciesReference-class
Aliases: ModifierSpeciesReference-class
Keywords: classes
Description: SBML type "ModifierSpeciesReference"
URL: ../../../library/rsbml/html/ModifierSpeciesReference-class.html

Entry: Parameter-class
Aliases: Parameter-class value,Parameter-method value value<-,Parameter-method value<- id<-,Parameter-method id,Parameter-method name<-,Parameter-method name,Parameter-method units<-,Parameter-method units,Parameter-method constant<-,Parameter-method constant,Parameter-method
Keywords: classes
Description: SBML type "Parameter"
URL: ../../../library/rsbml/html/Parameter-class.html

Entry: ParameterRule-class
Aliases: ParameterRule-class units,ParameterRule-method units<-,ParameterRule-method name,ParameterRule-method name<-,ParameterRule-method variable,ParameterRule-method variable<-,ParameterRule-method math,ParameterRule-method math<-,ParameterRule-method type,ParameterRule-method type<-,ParameterRule-method
Keywords: classes
Description: SBML type "ParameterRule"
URL: ../../../library/rsbml/html/ParameterRule-class.html

Entry: Point-class
Aliases: Point-class x,Point-method x x<-,Point-method x<- y,Point-method y y<-,Point-method y<- z,Point-method z z<-,Point-method z<-
Keywords: classes
Description: SBML type "Point"
URL: ../../../library/rsbml/html/Point-class.html

Entry: RateRule-class
Aliases: RateRule-class variable,RateRule-method variable variable<-,RateRule-method variable<-
Keywords: classes
Description: SBML type "RateRule"
URL: ../../../library/rsbml/html/RateRule-class.html

Entry: Reaction-class
Aliases: Reaction-class fast,Reaction-method fast fast<-,Reaction-method fast<- kineticLaw,Reaction-method kineticLaw kineticLaw<-,Reaction-method kineticLaw<- modifiers,Reaction-method modifiers modifiers<-,Reaction-method modifiers<- products,Reaction-method products products<-,Reaction-method products<- reactants,Reaction-method reactants reactants<-,Reaction-method reactants<- reversible,Reaction-method reversible reversible<-,Reaction-method reversible<- id,Reaction-method id<-,Reaction-method name,Reaction-method name<-,Reaction-method
Keywords: classes
Description: SBML type "Reaction"
URL: ../../../library/rsbml/html/Reaction-class.html

Entry: ReactionGlyph-class
Aliases: ReactionGlyph-class curve,ReactionGlyph-method curve curve<-,ReactionGlyph-method curve<- reaction,ReactionGlyph-method reaction reaction<-,ReactionGlyph-method reaction<- speciesReferenceGlyphs,ReactionGlyph-method speciesReferenceGlyphs speciesReferenceGlyphs<-,ReactionGlyph-method speciesReferenceGlyphs<-
Keywords: classes
Description: SBML type "ReactionGlyph"
URL: ../../../library/rsbml/html/ReactionGlyph-class.html

Entry: Rule-class
Aliases: Rule-class math,Rule-method math<-,Rule-method
Keywords: classes
Description: SBML type "Rule"
URL: ../../../library/rsbml/html/Rule-class.html

Entry: SBML-class
Aliases: SBML-class coerce,SBML,SBMLDocument-method coerce level,SBML-method level level<-,SBML-method level<- model,SBML-method model model<-,SBML-method model<- rsbml_doc,SBML-method rsbml_doc rsbml_write,SBML-method rsbml_write rsbml_xml,SBML-method rsbml_xml ver,SBML-method ver ver<-,SBML-method ver<- as.character.SBML
Keywords: classes
Description: SBML type "SBML"
URL: ../../../library/rsbml/html/SBML-class.html

Entry: SBMLDocument-class
Aliases: SBMLDocument-class coerce,SBMLDocument,graph-method coerce,SBMLDocument,SBML-method rsbml_check,SBMLDocument-method rsbml_check rsbml_dom,SBMLDocument-method rsbml_dom rsbml_graph,SBMLDocument-method rsbml_graph rsbml_problems,SBMLDocument-method rsbml_problems rsbml_write,SBMLDocument-method rsbml_xml,SBMLDocument-method as.character.SBMLDocument
Keywords: classes
Description: "SBMLDocument" from libsbml
URL: ../../../library/rsbml/html/SBMLDocument-class.html

Entry: SBase-class
Aliases: SBase-class annotation,SBase-method annotation annotation<-,SBase-method annotation<- metaId,SBase-method metaId metaId<-,SBase-method metaId<- notes,SBase-method notes notes<-,SBase-method notes<-
Keywords: classes
Description: SBML type "SBase"
URL: ../../../library/rsbml/html/SBase-class.html

Entry: SimpleSpeciesReference-class
Aliases: SimpleSpeciesReference-class id,SimpleSpeciesReference-method id<-,SimpleSpeciesReference-method species,SimpleSpeciesReference-method species<-,SimpleSpeciesReference-method
Keywords: classes
Description: SBML type "SimpleSpeciesReference"
URL: ../../../library/rsbml/html/SimpleSpeciesReference-class.html

Entry: Species-class
Aliases: Species-class boundaryCondition,Species-method boundaryCondition boundaryCondition<-,Species-method boundaryCondition<- charge,Species-method charge charge<-,Species-method charge<- compartment,Species-method compartment compartment<-,Species-method compartment<- constant,Species-method constant constant<-,Species-method constant<- hasOnlySubstanceUnits,Species-method hasOnlySubstanceUnits hasOnlySubstanceUnits<-,Species-method hasOnlySubstanceUnits<- initialAmount,Species-method initialAmount initialAmount<-,Species-method initialAmount<- initialConcentration,Species-method initialConcentration initialConcentration<-,Species-method initialConcentration<- spatialSizeUnits,Species-method spatialSizeUnits spatialSizeUnits<-,Species-method spatialSizeUnits<- substanceUnits,Species-method substanceUnits<-,Species-method id<-,Species-method id,Species-method name<-,Species-method name,Species-method units<-,Species-method units,Species-method
Keywords: classes
Description: SBML type "Species"
URL: ../../../library/rsbml/html/Species-class.html

Entry: SpeciesConcentrationRule-class
Aliases: SpeciesConcentrationRule-class species,SpeciesConcentrationRule-method species<-,SpeciesConcentrationRule-method
Keywords: classes
Description: SBML type "SpeciesConcentrationRule"
URL: ../../../library/rsbml/html/SpeciesConcentrationRule-class.html

Entry: SpeciesGlyph-class
Aliases: SpeciesGlyph-class species,SpeciesGlyph-method species species<-,SpeciesGlyph-method species<-
Keywords: classes
Description: SBML type "SpeciesGlyph"
URL: ../../../library/rsbml/html/SpeciesGlyph-class.html

Entry: SpeciesReference-class
Aliases: SpeciesReference-class stoichiometry,SpeciesReference-method stoichiometry stoichiometry<-,SpeciesReference-method stoichiometry<- stoichiometryMath,SpeciesReference-method stoichiometryMath stoichiometryMath<-,SpeciesReference-method stoichiometryMath<-
Keywords: classes
Description: SBML type "SpeciesReference"
URL: ../../../library/rsbml/html/SpeciesReference-class.html

Entry: SpeciesReferenceGlyph-class
Aliases: SpeciesReferenceGlyph-class role,SpeciesReferenceGlyph-method role role<-,SpeciesReferenceGlyph-method role<- speciesGlyph,SpeciesReferenceGlyph-method speciesGlyph speciesGlyph<-,SpeciesReferenceGlyph-method speciesGlyph<- speciesReference,SpeciesReferenceGlyph-method speciesReference speciesReference<-,SpeciesReferenceGlyph-method speciesReference<- curve,SpeciesReferenceGlyph-method curve<-,SpeciesReferenceGlyph-method
Keywords: classes
Description: SBML type "SpeciesReferenceGlyph"
URL: ../../../library/rsbml/html/SpeciesReferenceGlyph-class.html

Entry: SpeciesType-class
Aliases: SpeciesType-class id,SpeciesType-method id<-,SpeciesType-method name,SpeciesType-method name<-,SpeciesType-method
Keywords: classes
Description: SBML Type "SpeciesType"
URL: ../../../library/rsbml/html/SpeciesType-class.html

Entry: StoichiometryMath-class
Aliases: StoichiometryMath-class math,StoichiometryMath-method math<-,StoichiometryMath-method
Keywords: classes
Description: SBML type "StoichiometryMath"
URL: ../../../library/rsbml/html/StoichiometryMath-class.html

Entry: TextGlyph-class
Aliases: TextGlyph-class graphicalObject,TextGlyph-method graphicalObject graphicalObject<-,TextGlyph-method graphicalObject<- originOfText,TextGlyph-method originOfText originOfText<-,TextGlyph-method originOfText<- text,TextGlyph-method text text<-,TextGlyph-method text<-
Keywords: classes
Description: SBML type "TextGlyph"
URL: ../../../library/rsbml/html/TextGlyph-class.html

Entry: Trigger-class
Aliases: Trigger-class math,Trigger-method math<-,Trigger-method
Keywords: classes
Description: SBML Type "Trigger"
URL: ../../../library/rsbml/html/Trigger-class.html

Entry: Unit-class
Aliases: Unit-class exponent,Unit-method exponent exponent<-,Unit-method exponent<- kind,Unit-method kind kind<-,Unit-method kind<- multiplier,Unit-method multiplier multiplier<-,Unit-method multiplier<- offset,Unit-method offset offset<-,Unit-method offset<- scale,Unit-method scale scale<-,Unit-method scale<-
Keywords: classes
Description: SBML type "Unit"
URL: ../../../library/rsbml/html/Unit-class.html

Entry: UnitDefinition-class
Aliases: UnitDefinition-class id,UnitDefinition-method id id<-,UnitDefinition-method id<- name,UnitDefinition-method name name<-,UnitDefinition-method name<- units,UnitDefinition-method units units<-,UnitDefinition-method units<-
Keywords: classes
Description: SBML type "UnitDefinition"
URL: ../../../library/rsbml/html/UnitDefinition-class.html

Entry: SBML import
Aliases: rsbml_read
Keywords: IO
Description: Read in an SBML file (start here)
URL: ../../../library/rsbml/html/read.html
