Reaction-class             package:rsbml             R Documentation

_S_B_M_L _t_y_p_e "_R_e_a_c_t_i_o_n"

_D_e_s_c_r_i_p_t_i_o_n:

     Any transformation, transportation or binding process that changes
     the quantity of one or more 'Species'.

_I_n_s_t_a_n_t_i_a_t_i_o_n:

     Objects can be created by calls of the form 'new("Reaction",
     ...)'.

_S_l_o_t_s:

     '_i_d': Object of class '"character"' uniquely identifying this
          component. 

     '_n_a_m_e': Object of class '"character"' naming this component. 

     '_r_e_a_c_t_a_n_t_s': Object of class '"list"' containing 
          'SpeciesReference's specifying the  'Species' that are
          reactants for this reaction.

     '_p_r_o_d_u_c_t_s': Object of class '"list"' containing 
          'SpeciesReference's specifying the  'Species' that are
          products for this reaction. 

     '_m_o_d_i_f_i_e_r_s': Object of class '"list"' containing 
          'ModifierSpeciesReference's specifying the  'Species' that
          are modifiers for this reaction. 

     '_k_i_n_e_t_i_c_L_a_w': Object of class '"KineticLaw"' that dynamically 
          defines the rate of the reaction.

     '_r_e_v_e_r_s_i_b_l_e': Object of class '"logical"' indicating whether the
          direction of this reaction is reversible.

     '_f_a_s_t': Object of class '"logical"' indicating whether  this
          reaction should be considered instantaneous relative to
          non-fast reactions.

     '_m_e_t_a_I_d': Object of class '"character"' that is an XML ID
          "described" by an RDF resource. This links an SBML element to
          an RDF resource. RDF may appear anywhere in an SBML element,
          but is usually placed inside the 'annotation' element.

     '_n_o_t_e_s': Object of class '"character"'  containing user-readable
          XHTML notes about an element. 

     '_a_n_n_o_t_a_t_i_o_n': Object of class '"character"' containing additional
          machine-readable information about an element, usually as
          RDF, such as BioPAX. This is where application-specific data
          belongs.

_E_x_t_e_n_d_s:

     Class '"SBase"', directly.

_M_e_t_h_o_d_s:

     _i_d 'signature(object = "Reaction")': gets the 'id' slot 

     _i_d<- 'signature(object = "Reaction")': sets the 'id' slot 

     _n_a_m_e 'signature(object = "Reaction")': gets the 'name' slot 

     _n_a_m_e<- 'signature(object = "Reaction")': sets the 'name' slot 

     _f_a_s_t 'signature(object = "Reaction")': gets the 'fast' slot 

     _f_a_s_t<- 'signature(object = "Reaction")': sets the 'fast' slot 

     _k_i_n_e_t_i_c_L_a_w 'signature(object = "Reaction")': gets the 'kineticLaw'
          slot 

     _k_i_n_e_t_i_c_L_a_w<- 'signature(object = "Reaction")': sets the
          'kineticLaw' slot 

     _m_o_d_i_f_i_e_r_s 'signature(object = "Reaction")': gets the 'modifiers'
          slot 

     _m_o_d_i_f_i_e_r_s<- 'signature(object = "Reaction")': sets the 'modifiers'
          slot 

     _p_r_o_d_u_c_t_s 'signature(object = "Reaction")': gets the 'products'
          slot 

     _p_r_o_d_u_c_t_s<- 'signature(object = "Reaction")': sets the 'products'
          slot 

     _r_e_a_c_t_a_n_t_s 'signature(object = "Reaction")': gets the 'reactants'
          slot 

     _r_e_a_c_t_a_n_t_s<- 'signature(object = "Reaction")': sets the 'reactants'
          slot 

     _r_e_v_e_r_s_i_b_l_e 'signature(object = "Reaction")': gets the 'reversible'
          slot 

     _r_e_v_e_r_s_i_b_l_e<- 'signature(object = "Reaction")': sets the
          'reversible' slot 

_A_u_t_h_o_r(_s):

     Michael Lawrence

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://sbml.org/documents/>

