Model-class              package:rsbml              R Documentation

_S_B_M_L _t_y_p_e "_M_o_d_e_l"

_D_e_s_c_r_i_p_t_i_o_n:

     The central SBML element. Contains the 'Species', 'Reaction's,
     'Compartment's and other components of the model. See the SBML
     specification, at the reference, for further details.

_I_n_s_t_a_n_t_i_a_t_i_o_n:

     Objects can be created by calls of the form 'new("Model", ...)'.

_S_l_o_t_s:

     '_i_d': Object of class '"character"' uniquely identifying this
          component. 

     '_n_a_m_e': Object of class '"character"' naming this component. 

     '_f_u_n_c_t_i_o_n_D_e_f_i_n_i_t_i_o_n_s': Object of class '"list"' containing
          'FunctionDefinition's.

     '_u_n_i_t_D_e_f_i_n_i_t_i_o_n_s': Object of class '"list"' containing
          'UnitDefinition's. 

     '_c_o_m_p_a_r_t_m_e_n_t_s': Object of class '"list"' containing
          'Compartment's. 

     '_s_p_e_c_i_e_s': Object of class '"list"' containing 'Species's. 

     '_p_a_r_a_m_e_t_e_r_s': Object of class '"list"' containing 'Parameter's. 

     '_r_u_l_e_s': Object of class '"list"' containing 'Rule's. 

     '_r_e_a_c_t_i_o_n_s': Object of class '"list"' containing 'Reaction's. 

     '_e_v_e_n_t_s': Object of class '"list"' containing 'Event's. 

     '_l_a_y_o_u_t_s': Object of class '"list"' containing 'Layout's. 

     '_s_p_e_c_i_e_s_T_y_p_e_s': Object of class '"list"' containing
          'SpeciesType's.

     '_c_o_m_p_a_r_t_m_e_n_t_T_y_p_e_s': Object of class '"list"' containing
          'CompartmentType's.

     '_c_o_n_s_t_r_a_i_n_t_s': Object of class '"list"' containing 'Constraint's.

     '_i_n_i_t_i_a_l_A_s_s_i_g_n_m_e_n_t_s': Object of class '"list"' containing
          'InitialAssignment's.

_M_e_t_h_o_d_s:

     _i_d 'signature(object = "Model")': gets the 'id' slot 

     _i_d<- 'signature(object = "Model")': sets the 'id' slot 

     _n_a_m_e 'signature(object = "Model")': gets the 'name' slot 

     _n_a_m_e<- 'signature(object = "Model")': sets the 'name' slot 

     _c_o_m_p_a_r_t_m_e_n_t_s 'signature(object = "Model")': gets the
          'compartments' slot 

     _c_o_m_p_a_r_t_m_e_n_t_s<- 'signature(object = "Model")': sets the
          'compartments' slot 

     _e_v_e_n_t_s 'signature(object = "Model")': gets the 'events' slot 

     _e_v_e_n_t_s<- 'signature(object = "Model")': sets the 'events' slot 

     _f_u_n_c_t_i_o_n_D_e_f_i_n_i_t_i_o_n_s 'signature(object = "Model")': gets the
          'functionDefinitions' slot 

     _f_u_n_c_t_i_o_n_D_e_f_i_n_i_t_i_o_n_s<- 'signature(object = "Model")': sets the
          'functionDefinitions' slot 

     _l_a_y_o_u_t_s 'signature(object = "Model")': gets the 'layouts' slot 

     _l_a_y_o_u_t_s<- 'signature(object = "Model")': sets the 'layouts' slot 

     _p_a_r_a_m_e_t_e_r_s 'signature(object = "Model")': gets the 'parameters'
          slot 

     _p_a_r_a_m_e_t_e_r_s<- 'signature(object = "Model")': sets the 'parameters'
          slot 

     _s_p_e_c_i_e_s 'signature(object = "Model")': gets the 'species' slot 

     _s_p_e_c_i_e_s<- 'signature(object = "Model")': sets the 'species' slot 

     _r_e_a_c_t_i_o_n_s 'signature(object = "Model")': gets the 'reactions' slot 

     _r_e_a_c_t_i_o_n_s<- 'signature(object = "Model")': sets the 'reactions'
          slot 

     _r_u_l_e_s 'signature(object = "Model")': gets the 'rules' slot 

     _r_u_l_e_s<- 'signature(object = "Model")': sets the 'rules' slot 

     _u_n_i_t_D_e_f_i_n_i_t_i_o_n_s 'signature(object = "Model")': gets the
          'unitDefinitions' slot 

     _u_n_i_t_D_e_f_i_n_i_t_i_o_n_s<- 'signature(object = "Model")': sets the
          'unitDefinitions' slot 

     _c_o_m_p_a_r_t_m_e_n_t_T_y_p_e_s 'signature(object = "Model")': gets the
          'compartmentTypes' slot 

     _c_o_m_p_a_r_t_m_e_n_t_T_y_p_e_s<- 'signature(object = "Model")': sets the
          'compartmentTypes' slot 

     _c_o_n_s_t_r_a_i_n_t_s 'signature(object = "Model")': gets the 'constraints'
          slot 

     _c_o_n_s_t_r_a_i_n_t_s<- 'signature(object = "Model")': sets the
          'constraints' slot 

     _i_n_i_t_i_a_l_A_s_s_i_g_n_m_e_n_t_s 'signature(object = "Model")': gets the
          'initialAssignments' slot 

     _i_n_i_t_i_a_l_A_s_s_i_g_n_m_e_n_t_s<- 'signature(object = "Model")': sets the
          'initialAssignments' slot 

     _s_p_e_c_i_e_s_T_y_p_e_s 'signature(object = "Model")': gets the
          'speciesTypes' slot 

     _s_p_e_c_i_e_s_T_y_p_e_s<- 'signature(object = "Model")': sets the
          'speciesTypes' slot 

_A_u_t_h_o_r(_s):

     Michael Lawrence

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://sbml.org/documents/>

