graphcMAP             package:pathRender             R Documentation

_o_b_t_a_i_n _a _g_r_a_p_h _o_b_j_e_c_t _c_o_r_r_e_s_p_o_n_d_i_n_g _t_o _a
_c_M_A_P _p_a_t_h_w_a_y

_D_e_s_c_r_i_p_t_i_o_n:

     obtain a graph object corresponding to a cMAP pathway

_U_s_a_g_e:

     graphcMAP(pname)

_A_r_g_u_m_e_n_t_s:

   pname: character token identifying a KEGG or cMAP pathway

_D_e_t_a_i_l_s:

     reuses code from pathRender but emits a  'graphNEL-class' instance
     with some additional information for rendering

_V_a_l_u_e:

     an instance of pwayGraph, which extends graphNEL

_A_u_t_h_o_r(_s):

     Vince Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     G1 = graphcMAP("p53pathway")
     G1
     nodes(G1)
     if (require(Rgraphviz)) plot(G1)

