crosshybmoex10stv1na23mm8   package:oneChannelGUI   R Documentation

_C_r_o_s_s _h_y_b_r_i_d_u_z_a_t_i_o_n _d_a_t_a _f_o_r _e_x_o_n _C_O_R_E _s_u_b_s_e_t _o_f _m_o_u_s_e _e_x_o_n _a_r_r_a_y _1._0 _S_T

_D_e_s_c_r_i_p_t_i_o_n:

     These data are derived from Affymetrix annotation file
     moex10stv1na22mm8. XHYB field is mainly an indictor of weak
     assignment between a transcript cluster and the assigned mRNA,
     suggesting a potential crosshyb, CRSSHYB is a measure of the
     promiscuity of the probes within a probe set among transcribed
     sequences. \begin{enumerate}

     *  1 unique. All probes in the probe set perfectly match only one
        sequence in the putatively transcribed array design content.
        The vast majority of probe sets are unique.  

     *  2 similar.   All the probes in the probe set perfectly match
        more than one sequence in  the putatively transcribed array
        design content.

     *  3 mixed.The probes in the probe set either perfectly match or
        partially match more than one sequence  in the putatively
        transcribed array design content.  \end{enumerate} XHYB and
        CRSSHYB  are used to remove probe sets characterized by
        multiple hybridization of exon probes Cross-hybridization
        potential of the probe set determined at the time of array
        design.  This field is based on computational sequence
        alignment against all known and  putatively transcribed array
        design content, which includes all  potentially transcribed
        regions of the genome and other  transcribed sequences that
        could not be mapped to the genome.

_U_s_a_g_e:

     crosshybmoex10stv1na23mm8

_F_o_r_m_a_t:

     A data frame with 9 observations: EPROBESETID, GPROBESETID, ACC,
     XHYB, CHR, STRAND, START, STOP, CROSSHYBTYPE

_R_e_f_e_r_e_n_c_e_s:

     Affymetrix web site

