Entry: PlotGroups
Aliases: PlotGroups
Keywords: aplot
Description: Function for plotting gene expression profile at different experimental groups
URL: ../../../library/maSigPro/html/PlotGroups.html

Entry: PlotProfiles
Aliases: PlotProfiles
Keywords: aplot
Description: Function for visualization of gene expression profiles
URL: ../../../library/maSigPro/html/PlotProfiles.html

Entry: T.fit
Aliases: T.fit
Keywords: regression models
Description: Makes a stepwise regression fit for time series gene expression experiments
URL: ../../../library/maSigPro/html/T.fit.html

Entry: average.rows
Aliases: average.rows
Keywords: arith
Description: Average rows by match and index
URL: ../../../library/maSigPro/html/average.rows.html

Entry: data.abiotic
Aliases: data.abiotic
Keywords: datasets
Description: Gene expression data potato abiotic stress
URL: ../../../library/maSigPro/html/data.abiotic.html

Entry: edesign.OD
Aliases: edesign.OD
Keywords: datasets
Description: Experimental design with a measured independent variable
URL: ../../../library/maSigPro/html/edesign.OD.html

Entry: edesign.abiotic
Aliases: edesign.abiotic
Keywords: datasets
Description: Experimental design potato abiotic stress
URL: ../../../library/maSigPro/html/edesign.abiotic.html

Entry: edesignCT
Aliases: edesignCT
Keywords: datasets
Description: Experimental design with a shared time
URL: ../../../library/maSigPro/html/edesignCT.html

Entry: edesignDR
Aliases: edesignDR
Keywords: datasets
Description: Experimental design with different replicates
URL: ../../../library/maSigPro/html/edesignDR.html

Entry: get.siggenes
Aliases: get.siggenes
Keywords: manip
Description: Extract significant genes for sets of variables in time series gene expression experiments
URL: ../../../library/maSigPro/html/get.siggenes.html

Entry: i.rank
Aliases: i.rank
Keywords: arith
Description: Ranks a vector to index
URL: ../../../library/maSigPro/html/i.rank.html

Entry: maSigPro
Aliases: maSigPro
Keywords: manip models
Description: Wrapping function for identifying significant differential gene expression profiles in micorarray time course experiments
URL: ../../../library/maSigPro/html/maSigPro.html

Entry: make.design.matrix
Aliases: make.design.matrix
Keywords: design regression
Description: Make a design matrix for regression fit of time series gene expression experiments
URL: ../../../library/maSigPro/html/make.design.matrix.html

Entry: p.vector
Aliases: p.vector
Keywords: regression
Description: Make regression fit for time series gene expression experiments
URL: ../../../library/maSigPro/html/p.vector.html

Entry: position
Aliases: position
Keywords: arith
Description: Column position of a variable in a data frame
URL: ../../../library/maSigPro/html/position.html

Entry: reg.coeffs
Aliases: reg.coeffs
Keywords: misc
Description: Calculate true variables regression coefficients
URL: ../../../library/maSigPro/html/reg.coeffs.html

Entry: see.genes
Aliases: see.genes
Keywords: manip aplot
Description: Wrapper function for visualization of gene expression values of time course experiments
URL: ../../../library/maSigPro/html/see.genes.html

Entry: stepback
Aliases: stepback
Keywords: regression
Description: Fitting a linear model by backward-stepwise regression
URL: ../../../library/maSigPro/html/stepback.html

Entry: stepfor
Aliases: stepfor
Keywords: regression
Description: Fitting a linear model by forward-stepwise regression
URL: ../../../library/maSigPro/html/stepfor.html

Entry: suma2Venn
Aliases: suma2Venn
Keywords: misc aplot
Description: Creates a Venn Diagram from a matrix of characters
URL: ../../../library/maSigPro/html/suma2Venn.html

Entry: two.ways.stepback
Aliases: two.ways.stepback
Keywords: regression
Description: Fitting a linear model by backward-stepwise regression
URL: ../../../library/maSigPro/html/two.ways.stepback.html

Entry: two.ways.stepfor
Aliases: two.ways.stepfor
Keywords: regression
Description: Fitting a linear model by forward-stepwise regression
URL: ../../../library/maSigPro/html/two.ways.stepfor.html
