viewFlagHomo              package:fbat              R Documentation

_f_l_a_g _h_o_m_o/_h_e_t_e_r_o_z_y_g_o_t_e_s _f_o_r _s_p_e_c_i_f_i_e_d _m_a_r_k_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Flag homo/heterozygoter for specified marker.

_U_s_a_g_e:

     viewFlagHomo(flagHomo.object, markerName)

_A_r_g_u_m_e_n_t_s:

flagHomo.object: object returned by the function pedFlagHomo().

markerName: name of the specified marker.

_V_a_l_u_e:

countMatM: Count the number of homo/heterozygotes for the specified
          marker.

flagHomoMatM: Flag homo/heterozygotes for the specified marker. 1 -
          homozygotes; 0 - heterozygotes; -1 - genotype contains one
          missing allele; -2 - genotype contains two missing alleles.

_A_u_t_h_o_r(_s):

     Weiliang Qiu stwxq@channing.harvard.edu,  Ross Lazarus
     ross.lazarus@channing.harvard.edu,  Gregory Warnes
     warnes@bst.rochester.edu, Nitin Jain nitin.jain@pfizer.com

_E_x_a_m_p_l_e_s:

       data(CAMP)
       res<-pedFlagHomo(CAMP)
       viewFlagHomo(res, "p79")

