Entry: checkMarkers
Aliases: checkMarkers checkMarkers.default
Keywords: htest
Description: Basic data quality checks for markers
URL: ../../../library/fbat/html/checkMarkers.html

Entry: checkMendelian
Aliases: checkMendelian checkMendelian.default
Keywords: misc
Description: Check Mendelian Errors
URL: ../../../library/fbat/html/checkMendelian.html

Entry: fbat
Aliases: fbat fbat.default
Keywords: htest
Description: Family-Based Association Tests
URL: ../../../library/fbat/html/fbat.html

Entry: getFounders
Aliases: getFounders
Keywords: misc
Description: Get founders' information
URL: ../../../library/fbat/html/getFounders.html

Entry: missGFreq
Aliases: missGFreq missGFreq.default
Keywords: misc
Description: Count frequencies of missing genotypes
URL: ../../../library/fbat/html/missGFreq.html

Entry: pedAFreq
Aliases: pedAFreq pedAFreq.default
Keywords: htest
Description: get allele frequencies
URL: ../../../library/fbat/html/pedAFreq.html

Entry: pedFlagHomo
Aliases: pedFlagHomo pedFlagHomo.default
Keywords: htest
Description: flag homo/heterozygotes
URL: ../../../library/fbat/html/pedFlagHomo.html

Entry: pedGFreq
Aliases: pedGFreq pedGFreq.default
Keywords: htest
Description: get genotype frequencies
URL: ../../../library/fbat/html/pedGFreq.html

Entry: pedHardyWeinberg
Aliases: pedHardyWeinberg pedHardyWeinberg.default
Keywords: htest
Description: Test Hardy-Weinberg equilibrium for each marker based on parental data
URL: ../../../library/fbat/html/pedHardyWeinberg.html

Entry: readHapMap
Aliases: readHapMap
Keywords: misc
Description: Import HapMap data
URL: ../../../library/fbat/html/readHapMap.html

Entry: readLink
Aliases: readLink
Keywords: misc
Description: Import file with PLINK data format
URL: ../../../library/fbat/html/readLink.html

Entry: readPed
Aliases: readPed
Keywords: misc
Description: Import pedigree file from standard pedigree file format
URL: ../../../library/fbat/html/readPed.html

Entry: sampleInfoCEU
Aliases: sampleInfoCEU
Keywords: datasets
Description: Information about HapMap CEU subjects
URL: ../../../library/fbat/html/sampleInfoCEU.html

Entry: sampleInfoCHB
Aliases: sampleInfoCHB
Keywords: datasets
Description: Information about HapMap CHB subjects
URL: ../../../library/fbat/html/sampleInfoCHB.html

Entry: sampleInfoJPT
Aliases: sampleInfoJPT
Keywords: datasets
Description: Information about HapMap JPT subjects
URL: ../../../library/fbat/html/sampleInfoJPT.html

Entry: sampleInfoYRI
Aliases: sampleInfoYRI
Keywords: datasets
Description: Information about HapMap YRI subjects
URL: ../../../library/fbat/html/sampleInfoYRI.html

Entry: summaryPvalue
Aliases: summaryPvalue
Keywords: misc
Description: summarize the test statistics and p-values
URL: ../../../library/fbat/html/summaryPvalue.html

Entry: viewFlagHomo
Aliases: viewFlagHomo
Keywords: htest
Description: flag homo/heterozygotes for specified marker
URL: ../../../library/fbat/html/viewFlagHomo.html

Entry: viewHW
Aliases: viewHW
Keywords: htest
Description: View allele frequencies, Hardy-Weinberg equilibrium test statistics for specified marker
URL: ../../../library/fbat/html/viewHW.html

Entry: viewstat
Aliases: viewstat
Keywords: misc
Description: view statistics for a marker
URL: ../../../library/fbat/html/viewstat.html
