PC-class                Class "PC" represents the result of a simple
                        pairwise comparison between two groups of
                        arrays
Splanova-class          Class "Splanova" represents the result of a
                        splicing anova calculations
array.subset            Given an expression object get a particular
                        subset of arrays defined by the phenoData
gene.details            Use the X:MAP database to get detailed
                        annotation for genes, transcripts and exons
gene.graph              Use the X:MAP database to find annotated gene
                        structure and generate a plot
gene.legend             Generate a colour bar
gene.strip              Use the X:MAP database to find annotated gene
                        structure and generate a plot for multiple
                        genes
gene.to.exon.probeset   Using X:MAP database to translate genes into
                        exons and probesets
group.indices           Given an expression object get the array
                        indices for a particular set of arrays
pc                      Simple pariwise comparisons on exon expression
                        data
plot.gene               Use the X:MAP database to find annotated gene
                        structure and generate a plot
probeset.stats          Generates summary statistics showing intron,
                        exon and gene hits for the spefied probeset
                        list
probeset.to.probe       Use the X:MAP database to translate between
                        genes, transcripts, exons, probesets and probes
probesets.in.range      Find probesets, transcripts, exons and genes by
                        location
read.exon               Read a Set of .CEL Files and Phenotypic Data
                        representing exon arrays
select.probewise        Filtering of lists of probesets
splanova                Find probesets involved in differential
                        splicing for multiple treatments
splicing.index          Find probesets involved in differential
                        splicing for two treatments
x.rma                   Sample exonmap dataset
xmapBridge              Generate a data file which can be displayed in
                        the X:MAP browser using the X:MAP bridge
xmapDatabase            Switching between databases
xmapGene                Linking to X:MAP browser
