alterCN             package:beadarraySNP             R Documentation

_a_l_t_e_r_C_N

_D_e_s_c_r_i_p_t_i_o_n:

     Changes one of the levels of a cn.sum data structure

_U_s_a_g_e:

     alterCN(cn.sum, opa, value, updown)

_A_r_g_u_m_e_n_t_s:

  cn.sum: cn.sum structure to change

     opa: opa panel within the structure

   value: the predicted value to change

  updown: the value has a higher (TRUE) or lower (FALSE) cn value

_D_e_t_a_i_l_s:

     The state in the cn.sum structure that has a predicted value of
     'value'  will have it's associated associated inferred copy number
     increased ( 'updown' is 'TRUE') or decreased ('updown' is
     'FALSE'). The function makes sure that the copynumber values
     within a OPA panel have the  same order as the predicted values.

_V_a_l_u_e:

     a new cn.sum data structure

_N_o_t_e:

_A_u_t_h_o_r(_s):

     Jan Oosting

_S_e_e _A_l_s_o:

     interactiveCNselect, createCNSummary, setRealCN

