hSet-class            package:VanillaICE            R Documentation

_V_i_r_t_u_a_l _c_l_a_s_s _f_o_r _f_i_t_t_i_n_g _H_M_M_s _t_o _S_N_P _c_h_i_p _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     A virtual Class: No objects may be created from it.

_S_l_o_t_s:

     '_d_i_s_t_a_n_c_e': Object of class '"logical"'  

     '_i_n_i_t_i_a_l_S_t_a_t_e_P_r_o_b_a_b_i_l_i_t_y': Object of class '"NullOrNumeric"'  

     '_t_r_a_n_s_i_t_i_o_n_P_r_o_b_a_b_i_l_i_t_y': Object of class '"NullOrNumericOrMatrix"'            

     '_e_m_i_s_s_i_o_n_P_r_o_b_a_b_i_l_i_t_y': Object of class '"NullOrMatrix"'  

     '_l_i_k_e_l_i_h_o_o_d': Object of class '"NullOrMatrix"'  

     '_c_h_r_o_m_o_s_o_m_e_A_r_m': Object of class '"character"'  

     '_s_t_a_t_e_N_a_m_e_s': Object of class '"character"'  

     '_c_h_r_o_m_o_s_o_m_e_A_n_n_o_t_a_t_i_o_n': Object of class '"data.frame"'  

     '_a_s_s_a_y_D_a_t_a': Object of class '"AssayData"'  

     '_p_h_e_n_o_D_a_t_a': Object of class '"AnnotatedDataFrame"'  

     '_f_e_a_t_u_r_e_D_a_t_a': Object of class '"AnnotatedDataFrame"'  

     '_e_x_p_e_r_i_m_e_n_t_D_a_t_a': Object of class '"MIAME"'  

     '_a_n_n_o_t_a_t_i_o_n': Object of class '"character"'  

     '.___c_l_a_s_s_V_e_r_s_i_o_n__': Object of class '"Versions"'  

_E_x_t_e_n_d_s:

     Class 'AnnotatedSnpSet-class', directly. Class
     'AnnotatedSnpCallSet-class', by class "AnnotatedSnpSet", distance
     2. Class 'AnnotatedSnpCopyNumberSet-class', by class
     "AnnotatedSnpSet", distance 2, with explicit coerce. Class
     'SnpCallSet-clas', by class "AnnotatedSnpSet", distance 3. Class
     'class.eSet', by class "AnnotatedSnpSet", distance 4. Class
     'VersionedBiobase-class', by class "AnnotatedSnpSet", distance 5.
     Class 'Versioned-class', by class "AnnotatedSnpSet", distance 6.
     Class 'SnpCopyNumberSet-class', by class "AnnotatedSnpSet",
     distance 3, with explicit coerce. Class 'class.eSet', by class
     "AnnotatedSnpSet", distance 4, with explicit coerce. Class
     'VersionedBiobase-class', by class "AnnotatedSnpSet", distance 5,
     with explicit coerce. Class 'Versioned-class', by class
     "AnnotatedSnpSet", distance 6, with explicit coerce.

_M_e_t_h_o_d_s:

     _c_h_r_o_m_o_s_o_m_e_A_r_m 'signature(object = "hSet")' 

     _c_h_r_o_m_o_s_o_m_e_A_r_m<- 'signature(object = "hSet")' 

     _d_i_s_t_a_n_c_e 'signature(object = "hSet")' 

     _d_i_s_t_a_n_c_e<- 'signature(object = "hSet")' 

     _e_m_i_s_s_i_o_n_P_r_o_b_a_b_i_l_i_t_y 'signature(object = "hSet")' 

     _e_m_i_s_s_i_o_n_P_r_o_b_a_b_i_l_i_t_y<- 'signature(object = "hSet")' 

     _h_m_m_B_y_S_a_m_p_l_e 'signature(object = "hSet")' 

     _i_n_i_t_i_a_l_S_t_a_t_e_P_r_o_b_a_b_i_l_i_t_y 'signature(object = "hSet")' 

     _i_n_i_t_i_a_l_S_t_a_t_e_P_r_o_b_a_b_i_l_i_t_y<- 'signature(object = "hSet")' 

     _l_i_k_e_l_i_h_o_o_d 'signature(object = "hSet")' 

     _l_i_k_e_l_i_h_o_o_d<- 'signature(object = "hSet")' 

     _n_u_m_b_e_r_S_t_a_t_e_s 'signature(object = "hSet")' 

     _s_t_a_t_e_N_a_m_e_s 'signature(object = "hSet")' 

     _s_t_a_t_e_N_a_m_e_s<- 'signature(object = "hSet")' 

     _t_r_a_n_s_i_t_i_o_n_P_r_o_b_a_b_i_l_i_t_y 'signature(object = "hSet")' 

     _t_r_a_n_s_i_t_i_o_n_P_r_o_b_a_b_i_l_i_t_y<- 'signature(object = "hSet")' 

     _v_i_t_e_r_b_i 'signature(object = "hSet")' 

_N_o_t_e:

_A_u_t_h_o_r(_s):

_R_e_f_e_r_e_n_c_e_s:

     Robert Scharpf

_S_e_e _A_l_s_o:

     'HmmSnpSet-class', 'HmmSnpCopyNumberSet-class',
     'HmmSnpCallSet-class'

_E_x_a_m_p_l_e_s:

     showClass("hSet")

