getLohProbability         package:VanillaICE         R Documentation

_E_m_i_s_s_i_o_n _p_r_o_b_a_b_i_l_i_t_i_e_s _f_o_r _L_O_H

_D_e_s_c_r_i_p_t_i_o_n:

     Specifies default emission probabilities for loss of
     heterozygosity (LOH).  We define LOH as a sequence of homozygous
     genotypes longer than what we would expect to observe by chance.

_U_s_a_g_e:

     getLohProbability(object)

_A_r_g_u_m_e_n_t_s:

  object: Object of one of the HMM classes defined in 'ICE'

_D_e_t_a_i_l_s:

     If necessary, more details than the description above

_V_a_l_u_e:

     A matrix of default values for the LOH probability

_N_o_t_e:

_A_u_t_h_o_r(_s):

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

_E_x_a_m_p_l_e_s:

