Entry: anovaint
Aliases: anovaint
Keywords: models regression
Description: One-factorial ANOVA assessing intensity-dependent bias
URL: ../../../library/OLIN/html/anovaint.html

Entry: anovapin
Aliases: anovapin
Keywords: models regression
Description: One-factorial ANOVA assessing pin-dependent bias.
URL: ../../../library/OLIN/html/anovapin.html

Entry: anovaplate
Aliases: anovaplate
Keywords: models regression
Description: One-factorial ANOVA assessing pin-dependent bias.
URL: ../../../library/OLIN/html/anovaplate.html

Entry: anovaspatial
Aliases: anovaspatial
Keywords: models regression
Description: One-factorial ANOVA assessing spatial bias
URL: ../../../library/OLIN/html/anovaspatial.html

Entry: backgroundCorrect2
Aliases: backgroundCorrect2
Keywords: utilities
Description: Background correction
URL: ../../../library/OLIN/html/backgroundCorrect2.html

Entry: bas
Aliases: bas
Keywords: utilities
Description: Between-array scaling
URL: ../../../library/OLIN/html/bas.html

Entry: colorbar.mxy
Aliases: colorbar.mxy
Keywords: hplot
Description: Generates a colour bar
URL: ../../../library/OLIN/html/colorbar.mxy.html

Entry: colorbar.mxy.abs
Aliases: colorbar.mxy.abs
Keywords: hplot
Description: Generates a colour bar
URL: ../../../library/OLIN/html/colorbar.mxy.abs.html

Entry: colorbar.sig
Aliases: colorbar.sig
Keywords: hplot
Description: Generates a colour bar for spatial significance plots
URL: ../../../library/OLIN/html/colorbar.sig.html

Entry: fdr.int
Aliases: fdr.int
Keywords: nonparametric univar htest
Description: Assessment of the significance of intensity-dependent bias
URL: ../../../library/OLIN/html/fdr.int.html

Entry: fdr.int2
Aliases: fdr.int2
Keywords: nonparametric univar htest
Description: Assessment of the significance of intensity-dependent bias
URL: ../../../library/OLIN/html/fdr.int2.html

Entry: fdr.spatial
Aliases: fdr.spatial
Keywords: nonparametric univar htest
Description: Assessment of the significance of spatial bias
URL: ../../../library/OLIN/html/fdr.spatial.html

Entry: fdr.spatial2
Aliases: fdr.spatial2
Keywords: nonparametric univar htest
Description: Assessment of the significance of spatial bias
URL: ../../../library/OLIN/html/fdr.spatial2.html

Entry: fgbg.visu
Aliases: fgbg.visu
Keywords: hplot
Description: Visualisation of foreground and background fluorescence spot intensities in both channels
URL: ../../../library/OLIN/html/fgbg.visu.html

Entry: ino
Aliases: ino
Keywords: utilities regression
Description: Intensity-dependent normalisation of two-colour microarrays
URL: ../../../library/OLIN/html/ino.html

Entry: lin
Aliases: lin
Keywords: utilities regression
Description: Local intensity-dependent normalisation of two-colour microarrays
URL: ../../../library/OLIN/html/lin.html

Entry: m2v
Aliases: m2v
Keywords: manip
Description: Converts matrix to vector based on spot layout
URL: ../../../library/OLIN/html/m2v.html

Entry: ma.matrix
Aliases: ma.matrix
Keywords: utilities regression
Description: Calculation of moving average for a matrix
URL: ../../../library/OLIN/html/ma.matrix.html

Entry: ma.vector
Aliases: ma.vector
Keywords: utilities regression
Description: Calculation of moving average for a vector
URL: ../../../library/OLIN/html/ma.vector.html

Entry: mxy.abs.plot
Aliases: mxy.abs.plot
Keywords: hplot
Description: Generation of MXY plots of absolute values
URL: ../../../library/OLIN/html/mxy.abs.plot.html

Entry: mxy.plot
Aliases: mxy.plot
Keywords: hplot
Description: Generation of MXY plots
URL: ../../../library/OLIN/html/mxy.plot.html

Entry: mxy2.plot
Aliases: mxy2.plot
Keywords: hplot
Description: Generation of MXY plots based on spot coordinates
URL: ../../../library/OLIN/html/mxy2.plot.html

Entry: oin
Aliases: oin
Keywords: utilities regression
Description: Optimised intensity-dependent normalisation of two-colour microarrays
URL: ../../../library/OLIN/html/oin.html

Entry: olin
Aliases: olin
Keywords: utilities regression
Description: Optimised local intensity-dependent normalisation of two-colour microarrays
URL: ../../../library/OLIN/html/olin.html

Entry: p.int
Aliases: p.int
Keywords: nonparametric univar htest
Description: Calculates significance of intensity-dependent bias
URL: ../../../library/OLIN/html/p.int.html

Entry: p.int2
Aliases: p.int2
Keywords: nonparametric univar htest
Description: Calculates significance of intensity-dependent bias
URL: ../../../library/OLIN/html/p.int2.html

Entry: p.spatial
Aliases: p.spatial
Keywords: nonparametric univar htest
Description: Assessment of the significance of spatial bias based on p-values
URL: ../../../library/OLIN/html/p.spatial.html

Entry: p.spatial2
Aliases: p.spatial2
Keywords: nonparametric univar htest
Description: Assessment of the significance of spatial bias based on p-values
URL: ../../../library/OLIN/html/p.spatial2.html

Entry: sig.mask
Aliases: sig.mask
Keywords: hplot
Description: Masking of data based on significance testing
URL: ../../../library/OLIN/html/sig.mask.html

Entry: sigint.plot
Aliases: sigint.plot
Keywords: hplot
Description: Visualisation of significance of intensity-dependent bias
URL: ../../../library/OLIN/html/sigint.plot.html

Entry: sigint.plot2
Aliases: sigint.plot2
Keywords: hplot
Description: Visualisation of significance of intensity-dependent bias
URL: ../../../library/OLIN/html/sigint.plot2.html

Entry: sigxy.plot
Aliases: sigxy.plot
Keywords: hplot
Description: Visualisation of significance tests for spatial bias
URL: ../../../library/OLIN/html/sigxy.plot.html

Entry: sigxy.plot2
Aliases: sigxy.plot2
Keywords: hplot
Description: Visualisation of significance tests for spatial bias
URL: ../../../library/OLIN/html/sigxy.plot2.html

Entry: sw
Aliases: sw
Keywords: datasets
Description: cDNA microarray data of SW480/SW620 experiment
URL: ../../../library/OLIN/html/sw.html

Entry: sw.olin
Aliases: sw.olin
Keywords: datasets
Description: Normalised cDNA microarray data of SW480/SW620 experiment
URL: ../../../library/OLIN/html/sw.olin.html

Entry: sw.xy
Aliases: sw.xy
Keywords: datasets
Description: Spatial coordinates of spot locations of SW480/SW620 experiment
URL: ../../../library/OLIN/html/sw.xy.html

Entry: v2m
Aliases: v2m
Keywords: manip
Description: Converts vector to matrix based on spot layout
URL: ../../../library/OLIN/html/v2m.html
