Entry: Multiple testing on the GO graph
Aliases: makeGOstructure getFocus GAGO
Keywords: htest
Description: Multiple testing on the GO graph
URL: ../../../library/GlobalAncova/html/GAGO.html

Entry: GlobalAncova
Aliases: GlobalAncova-methods GlobalAncova,matrix,formula,formula,ANY,missing,missing,missing-method GlobalAncova,matrix,formula,missing,ANY,missing,missing,character-method GlobalAncova,matrix,missing,missing,missing,ANY,ANY,missing-method
Keywords: methods
Description: Methods for Function GlobalAncova
URL: ../../../library/GlobalAncova/html/GlobalAncova-methods.html

Entry: GlobalAncova
Aliases: GlobalAncova
Keywords: models
Description: Global test for differential gene expression
URL: ../../../library/GlobalAncova/html/GlobalAncova.html

Entry: GlobalAncova.closed
Aliases: GlobalAncova.closed-methods GlobalAncova.closed,matrix,list,formula,formula,ANY,missing,missing,missing-method GlobalAncova.closed,matrix,list,formula,missing,ANY,missing,missing,character-method GlobalAncova.closed,matrix,list,missing,missing,missing,ANY,ANY,missing-method
Keywords: models
Description: Methods for Function GlobalAncova.closed
URL: ../../../library/GlobalAncova/html/GlobalAncova.closed-methods.html

Entry: GlobalAncova.closed
Aliases: GlobalAncova.closed
Keywords: models
Description: Closed testing procedure for testing several groups of genes using GlobalAncova
URL: ../../../library/GlobalAncova/html/GlobalAncova.closed.html

Entry: GlobalAncova.decomp
Aliases: GlobalAncova.decomp
Keywords: models
Description: GlobalAncova with sequential and type III sum of squares decomposition and adjustment for global covariates
URL: ../../../library/GlobalAncova/html/GlobalAncova.decomp.html

Entry: Plot.all
Aliases: Plot.all
Keywords: hplot
Description: Combined visualization of sequential decomposition and influence of single genes on the GlobalAncova statistic
URL: ../../../library/GlobalAncova/html/Plot.all.html

Entry: Plot.genes
Aliases: Plot.genes-methods Plot.genes,matrix,formula,formula,ANY,missing,missing,missing-method Plot.genes,matrix,formula,missing,ANY,missing,missing,character-method Plot.genes,matrix,missing,missing,missing,ANY,ANY,missing-method
Keywords: hplot
Description: Methods for Function Plot.genes
URL: ../../../library/GlobalAncova/html/Plot.genes-methods.html

Entry: Plot.genes
Aliases: Plot.genes
Keywords: hplot
Description: Genes Plot for Global Ancova
URL: ../../../library/GlobalAncova/html/Plot.genes.html

Entry: Plot.sequential
Aliases: Plot.sequential
Keywords: hplot
Description: Visualization of sequential decomposition
URL: ../../../library/GlobalAncova/html/Plot.sequential.html

Entry: Plot.subjects
Aliases: Plot.subjects-methods Plot.subjects,matrix,formula,formula,ANY,missing,missing,missing-method Plot.subjects,matrix,formula,missing,ANY,missing,missing,character-method Plot.subjects,matrix,missing,missing,missing,ANY,ANY,missing-method
Keywords: hplot
Description: Methods for Function Plot.subjects
URL: ../../../library/GlobalAncova/html/Plot.subjects-methods.html

Entry: Plot.subjects
Aliases: Plot.subjects
Keywords: hplot
Description: Subjects Plot for GlobalAncova
URL: ../../../library/GlobalAncova/html/Plot.subjects.html

Entry: colon.normal
Aliases: colon.normal
Keywords: datasets
Description: Gene expression data
URL: ../../../library/GlobalAncova/html/colon.normal.html

Entry: colon.pheno
Aliases: colon.pheno
Keywords: datasets
Description: Covariate information for the colon data
URL: ../../../library/GlobalAncova/html/colon.pheno.html

Entry: colon.tumour
Aliases: colon.tumour
Keywords: datasets
Description: Gene expression data
URL: ../../../library/GlobalAncova/html/colon.tumour.html

Entry: pair.compare
Aliases: pair.compare
Keywords: models
Description: Pairwise comparisons of factor levels within GlobalAncova
URL: ../../../library/GlobalAncova/html/pair.compare.html

Entry: pathways
Aliases: pathways
Keywords: datasets
Description: Cancer related pathways
URL: ../../../library/GlobalAncova/html/pathways.html

Entry: phenodata
Aliases: phenodata
Keywords: datasets
Description: Covariate information for the van t'Veer data
URL: ../../../library/GlobalAncova/html/phenodata.html

Entry: vantVeer
Aliases: vantVeer
Keywords: datasets
Description: Gene expression data
URL: ../../../library/GlobalAncova/html/vantVeer.html
