GOXMLParser            package:AnnBuilder            R Documentation

_P_a_r_s_e _t_h_e _G_e_n_e _O_n_t_o_l_o_g_y _O_B_O _X_M_L _d_a_t_a _f_i_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     Generate R 'environment' objects containing data parsed from the
     Gene Ontology (GO) XML data file.  The GO data file is available
     from <URL: http://www.geneontology.org>.  This parser is designed
     to parse the 'go_YYYYMM-termdb.obo-xml' file.

_U_s_a_g_e:

     GOXMLParser(fileName)

_A_r_g_u_m_e_n_t_s:

fileName: Name of the XML file containing the GO source data in obo-xml
          format.

_V_a_l_u_e:

     A list of 'environment' objects representing the GO data
     structures.  The environments returned are: 

    TERM: See GOTERM environment in the GO package

BPPARENTS: See the GOBPPARENTS environment in the GO data packagey

MFPARENTS: See the GOMFPARENTS environment in the GO data package

CCPARENTS: See the GOCCPARENTS environment in the GO data package

BPCHILDREN: See the GOBPCHILDREN environment in the GO data package

MFCHILDREN: See the GOMFCHILDREN environment in the GO data package

CCCHILDREN: See the GOCCCHILDREN environment in the GO data package

OBSOLETE: See the GOOBSOLETE environment in the GO data package

BPOFFSPRING: See the GOBPOFFSPRING environment in the GO data package

MFOFFSPRING: See the GOMFOFFSPRING environment in the GO data package

CCOFFSPRING: See the GOCCOFFSPRING environment in the GO data package

BPANCESTOR: See the GOBPANCESTOR environment in the GO data package

MFANCESTOR: See the GOMFANCESTOR environment in the GO data package

CCANCESTOR: See the GOCCANCESTOR environment in the GO data package

_A_u_t_h_o_r(_s):

     Chenwei Lin, John Zhang, Seth Falcon

