Entry: GOstructure
Aliases: GOstructure GOstructure-class length,GOstructure-method genesets genesets,GOstructure-method show,GOstructure-method
Keywords: methods
Description: Class "GOstructure" to serve as input for the function gtGO
URL: ../../../library/globaltest/html/GOstructure.html

Entry: annotation.vandeVijver
Aliases: annotation.vandeVijver
Keywords: datasets
Description: Some selected annotations for the breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute, to serve as example data in the globaltest package.
URL: ../../../library/globaltest/html/annotation.vandeVijver.html

Entry: checkerboard
Aliases: checkerboard
Keywords: hplot
Description: Checkerboard plot for Global Test
URL: ../../../library/globaltest/html/checkerboard.html

Entry: geneplot
Aliases: geneplot
Keywords: hplot
Description: Gene Plot for Global Test
URL: ../../../library/globaltest/html/geneplot.html

Entry: globaltest
Aliases: globaltest
Keywords: htest
Description: Global Test
URL: ../../../library/globaltest/html/globaltest.html

Entry: gostructure.vandeVijver
Aliases: gostructure.vandeVijver
Keywords: datasets
Description: A GOstructure object for the breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute, to serve as example data in the globaltest package.
URL: ../../../library/globaltest/html/gostructure.vandeVijver.html

Entry: gt.barplot-class
Aliases: gt.barplot-class z.score gt.barplot show,gt.barplot-method [,gt.barplot-method length,gt.barplot-method result,gt.barplot-method plot,gt.barplot-method scale,gt.barplot-method sort,gt.barplot-method gt.barplot z.score,gt.barplot-method names,gt.barplot-method names<-,gt.barplot-method
Keywords: methods
Description: Class "gt.barplot" for results of the functions geneplot and sampleplot
URL: ../../../library/globaltest/html/gt.barplot-class.html

Entry: gt.result-class
Aliases: p.value gt.result result size gt.result-class show,gt.result-method size,gt.result-method [,gt.result-method length,gt.result-method hist,gt.result-method result,gt.result-method p.value,gt.result-method z.score,gt.result-method names,gt.result-method names<-,gt.result-method sort,gt.result-method combine,gt.result-method combine fit,gt.result-method fit
Keywords: methods
Description: Class "gt.result" for results of the function globaltest
URL: ../../../library/globaltest/html/gt.result-class.html

Entry: Multiple testing on the GO graph
Aliases: makeGOstructure getFocus gtGO
Keywords: htest
Description: Multiple testing on the GO graph
URL: ../../../library/globaltest/html/gtGO.html

Entry: mlogit
Aliases: mlogit mlogit-class residuals,mlogit-method fitted.values,mlogit-method coefficients,mlogit-method summary,mlogit-method show,mlogit-method
Keywords: nonlinear
Description: Multinomial Logistic Regression
URL: ../../../library/globaltest/html/mlogit.html

Entry: gt.multtest
Aliases: gt.multtest
Keywords: htest
Description: Correct globaltest results for multiple testing
URL: ../../../library/globaltest/html/multtest.html

Entry: permutations
Aliases: permutations
Keywords: htest
Description: Permutations version of the Global Test
URL: ../../../library/globaltest/html/permutations.html

Entry: regressionplot
Aliases: regressionplot
Keywords: hplot
Description: Regression Plot for Global Test
URL: ../../../library/globaltest/html/regressionplot.html

Entry: sampleplot
Aliases: sampleplot
Keywords: hplot
Description: Sample Plot for Global Test
URL: ../../../library/globaltest/html/sampleplot.html

Entry: sampling
Aliases: sampling
Keywords: htest
Description: Sampling random 'pathways' for the Global Test
URL: ../../../library/globaltest/html/sampling.html

Entry: vandeVijver
Aliases: vandeVijver
Keywords: datasets
Description: A subset of the Breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute.
URL: ../../../library/globaltest/html/vandeVijver.html
