Entry: PC-class
Aliases: PC-class [<-,PC-method [,PC-method fc,PC-method tt,PC-method
Keywords: classes
Description: Class "PC" represents the result of a simple pairwise comparison between two groups of arrays
URL: ../../../library/exonmap/html/PC-class.html

Entry: Splanova-class
Aliases: Splanova-class fval,Splanova-method sig,Splanova-method
Keywords: classes
Description: Class "Splanova" represents the result of a splicing anova calculations
URL: ../../../library/exonmap/html/Splanova-class.html

Entry: probeset.to.probe
Aliases: probeset.to.probe probeset.to.exon probeset.to.transcript probeset.to.gene exon.to.probeset exon.to.transcript exon.to.gene transcript.to.gene transcript.to.exon transcript.to.probeset gene.to.transcript gene.to.exon gene.to.probeset symbol.to.probeset symbol.to.gene
Keywords: misc
Description: Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes
URL: ../../../library/exonmap/html/X.toY.html

Entry: array.subset
Aliases: array.subset array.subset,AffyBatch-method array.subset,exprSet-method
Keywords: misc
Description: Given an expression object get a particular subset of arrays defined by the phenoData
URL: ../../../library/exonmap/html/array.subset.html

Entry: gene.details
Aliases: gene.details transcript.details exon.details
Keywords: misc
Description: Use the X:MAP database to get detailed annotation for genes, transcripts and exons
URL: ../../../library/exonmap/html/gene.details.html

Entry: gene.legend
Aliases: gene.legend
Keywords: misc
Description: Add a colour bar to an X:MAP gene plot
URL: ../../../library/exonmap/html/gene.legend.html

Entry: gene.strip
Aliases: gene.strip
Keywords: misc
Description: Use the X:MAP database to find annotated gene structure and generate a plot for multiple genes
URL: ../../../library/exonmap/html/gene.strip.html

Entry: gene.to.exon.probeset
Aliases: gene.to.exon.probeset gene.to.exon.probeset.expr
Keywords: misc
Description: Using X:MAP database to translate genes into exons and probesets
URL: ../../../library/exonmap/html/gene.to.exon.probeset.html

Entry: group.indices
Aliases: group.indices
Keywords: misc
Description: Given an expression object get the array indices for a particular set of arrays
URL: ../../../library/exonmap/html/group.indices.html

Entry: pc
Aliases: pc fc tt
Keywords: misc
Description: Simple pariwise comparisons on exon expression data
URL: ../../../library/exonmap/html/pc.html

Entry: plot.gene
Aliases: plot.gene col.rd.bl
Keywords: misc
Description: Use the X:MAP database to find annotated gene structure and generate a plot
URL: ../../../library/exonmap/html/plot.gene.html

Entry: plot.gene.graph
Aliases: plot.gene.graph
Keywords: misc
Description: Use the X:MAP database to find annotated gene structure and generate a plot
URL: ../../../library/exonmap/html/plot.gene.graph.html

Entry: probeset.stats
Aliases: probeset.stats
Keywords: misc
Description: Generates summary statistics showing intron, exon and gene hits for the spefied probeset list
URL: ../../../library/exonmap/html/probeset.stats.html

Entry: probesets.in.range
Aliases: probesets.in.range probes.only.in.range genes.in.range
Keywords: misc
Description: Find probesets and genes by location
URL: ../../../library/exonmap/html/probesets.in.range.html

Entry: read.exon
Aliases: read.exon
Keywords: misc
Description: Read a Set of .CEL Files and Phenotypic Data representing exon arrays
URL: ../../../library/exonmap/html/read.exon.html

Entry: select.probewise
Aliases: select.probewise exclude.probewise probesets.in.eset
Keywords: misc
Description: Filtering of lists of probesets
URL: ../../../library/exonmap/html/select.probewise.html

Entry: splanova
Aliases: splanova fval sig
Keywords: misc
Description: Find probesets involved in differential splicing for multiple treatments
URL: ../../../library/exonmap/html/splanova.html

Entry: splicing.index
Aliases: splicing.index
Keywords: misc
Description: Find probesets involved in differential splicing for two treatments
URL: ../../../library/exonmap/html/splicing.index.html

Entry: x.rma
Aliases: x.rma
Keywords: misc
Description: Sample exonmap dataset
URL: ../../../library/exonmap/html/x.rma.html

Entry: xmapDatabase
Aliases: xmapDatabase dbMouse dbHuman showXmapDatabase
Keywords: misc
Description: Switching between databases
URL: ../../../library/exonmap/html/xmapDatabase.html

Entry: xmapGene
Aliases: xmapGene xmapTranscript xmapExon xmapProbeset
Keywords: misc
Description: Linking to X:MAP browser
URL: ../../../library/exonmap/html/xmapGene.html
