removeLowQualityProbes     package:beadarraySNP     R Documentation

_Q_u_a_l_i_t_y _c_o_n_t_r_o_l _o_f _S_n_p_S_e_t_I_l_l_u_m_i_n_a _o_b_j_e_c_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Remove probes form a SnpSetIllumina object that show a low quality
     throughout  the experiment

_U_s_a_g_e:

     removeLowQualityProbes(object, cutoff = 0.25)

_A_r_g_u_m_e_n_t_s:

  object: SnpSetIllumina object

  cutoff: numeric

_D_e_t_a_i_l_s:

     Probes that have a median value below 'cutoff' * median value for
     the whole experiment are deleted from the object.

_V_a_l_u_e:

     SnpSetIllumina object

_A_u_t_h_o_r(_s):

     Jan Oosting

