smoothSnp              package:SNPchip              R Documentation

_A _s_i_m_p_l_e _n_o_n_p_a_r_a_m_e_t_r_i_c _s_m_o_o_t_h_e_r _f_o_r _g_e_n_o_t_y_p_e _a_n_d _c_o_p_y _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     A loess smoother for finding regions of reduced copy number and
     loss of heterozygosity.

_U_s_a_g_e:

     smoothSnp(object, ...)

_A_r_g_u_m_e_n_t_s:

  object: Object derived from 'AnnotatedSnpSet'

     ...: For additional arguments see details.

_D_e_t_a_i_l_s:

     Additional arguments include the chromosomes (character vector)
     and samples (numerical vector) to smooth.  Options for smoothing
     are set by specifying the span and the method.  The loess method
     is the default and the only method currently available.

_V_a_l_u_e:

     An object of the same class, e.g., 'AnnotatedSnpSet', but
     assayData elements copyNumber and calls are replaced by the
     smoothed values.

_N_o_t_e:

_A_u_t_h_o_r(_s):

     Robert Scharpf

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

_E_x_a_m_p_l_e_s:

