addTypes	Ringo-internal
arrayImage	arrayImage
as.data.frame.peakList	Ringo-internal
asExprSet	asExprSet
autocor	autocorr
autocorr	autocorr
autocorrelation	autocorr
calcOverlapDfVsDf	Ringo-internal
chipAlongChrom	chipAlongChrom
clusters	Ringo-internal
combine.tables	Ringo-internal
computeRunningMedians	computeRunningMedians
corPlot	corrPlot
corrPlot	corrPlot
findPeaksOnSmoothed	findPeaksOnSmoothed
ftr2xys	ftr2xys
generatePeakList	Ringo-internal
getGeneToTranscriptMap	Ringo-internal
getTranscriptToGeneMap	Ringo-internal
image.RGList	arrayImage
merge.RGList	Ringo-internal
newPeak	newPeak
nimblegenNorm	nimblegenNorm
panel.cor	Ringo-internal
panel.scatter	Ringo-internal
peak	peakClass
peak-class	peakClass
peakByThreshold	peakByThreshold
peakList	peakClass
peakList-class	peakClass
peakPlot	plot_peak
plot.autocor.result	plotAutocorr
plot.peak	plot_peak
plotAutocor	plotAutocorr
plotPeak	plot_peak
preprocess	preprocess
print.peak	peakClass
readNgIntensitiesTxt	Ringo-internal
readNimblegen	readNimblegen
readNimblegenHeader	Ringo-internal
relatePeaks	relatePeaks
sliding.median	sliding_median
sliding.quantile	sliding_quantile
slidingmedian	sliding_median
slidingquantile	sliding_quantile
splitAndSimplify	Ringo-internal
takeMeanOverGroups	Ringo-internal
typifyList	Ringo-internal
