anovaint                            One-factorial ANOVA assessing intensity-dependent bias
anovapin                            One-factorial ANOVA assessing pin-dependent bias
anovaplate                          One-factorial ANOVA assessing pin-dependent bias
anovaspatial                        One-factorial ANOVA assessing spatial bias
backgroundCorrect2		    Background correction
bas                                 Between-array scaling
colorbar.mxy                        Generates a colour bar
colorbar.mxy.abs                    Generates a colour bar
colorbar.sig                        Generates a colour bar for spatial significance plots
fdr.int                             Assessment of the significance of intensity-dependent bias
fdr.int2                            Assessment of the significance of intensity-dependent bias
fdr.spatial                         Assessment of the significance of spatial bias
fdr.spatial2                        Assessment of the significance of spatial bias
fgbg.visu                           Visualisation of foreground and background fluorescence spot intensities
                                    in both channels
ino                                 Intensity-dependent normalisation of two-colour microarrays
lin                                 Local intensity-dependent normalisation of two-colour microarrays
m2v                                 Converts matrix to vector based on spot layout
ma.matrix                           Calculation of moving average for a matrix
ma.vector                           Calculation of moving average for a vector
mxy.abs.plot                        Generation of MXY plots of absolute values
mxy.plot                            Generation of MXY plots
mxy2.plot                           Generation of MXY plots based on spot coordinates
oin                                 Optimised intensity-dependent normalisation of two-colour microarrays
olin                                Optimised local intensity-dependent normalisation of two-colour
                                    microarrays
p.int                               Calculates significance of intensity-dependent bias
p.int2                              Calculates significance of intensity-dependent bias
p.spatial                           Assessment of the significance of spatial bias based on p-values
p.spatial2                          Assessment of the significance of spatial bias based on p-values
sig.mask                            Masking of data based on significance testing
sigint.plot                         Visualisation of significance of intensity-dependent bias
sigint.plot2                        Visualisation of significance of intensity-dependent bias
sigxy.plot                          Visualisation of significance tests for spatial bias
sigxy.plot2                         Visualisation of significance tests for spatial bias
sw                                  cDNA microarray data of SW480/SW620 experiment
sw.olin                             Normalised cDNA microarray data of SW480/SW620 experiment
sw.xy                               Spatial coordinates of spot locations of SW480/SW620 experiment
v2m                                 Converts vector to matrix based on spot layout
