plotChromosome          package:quantsmooth          R Documentation

_W_r_a_p_p_e_r _f_o_r _p_l_o_t_S_m_o_o_t_h_e_d

_D_e_s_c_r_i_p_t_i_o_n:

     This function is a wrapper for plotSmoothed, to make data
     subsetting easier

_U_s_a_g_e:

     plotChromosome(gendata, chrompos, chromosome, dataselection = NULL, ylim = NULL, normalized.to = NULL, grid = NULL, smooth.lambda = 2, interval = 0.5, ...)

_A_r_g_u_m_e_n_t_s:

 gendata: numeric matrix or data.frame

chrompos: chrompos object with same numer of rows as gendata

chromosome: numeric, chromosme to show

dataselection: optional, subset of samples/columns in gendata

    ylim: limits for plot

normalized.to: y-value(s) for line

    grid: x-value(s) for line

smooth.lambda: smoothing parameter, see 'quantsmooth'

interval: position of extra lines besides median, see 'plotSmoothed'

     ...: extra arguments for 'plotSmoothed'

_D_e_t_a_i_l_s:

_V_a_l_u_e:

     The function is used for its side effects

_A_u_t_h_o_r(_s):

     Jan Oosting

_S_e_e _A_l_s_o:

     'plotSmoothed', 'quantsmooth'

