DFS                     Depth First Search
aM2bpG                  Coercions between matrix and graph
                        representations
acc-methods             Methods for Accessibility Lists
addEdge                 addEdge
addNode                 addNode
adj-methods             Methods for finding the adjacency list for
                        selected nodes.
apopGraph               KEGG apoptosis pathway graph
attrData-class          Class "attrData"
attrDataItem-methods    Get and set attributes values for items in an
                        attrData object
attrDefaults-methods    Get and set the default attributes of an
                        attrData object
aveNumEdges             Calculate the average number of edges in a
                        graph
biocRepos               A graph representing the Bioconductor package
                        repository
boundary                Returns the Boundary between a Graph and a
                        SubGraph
buildRepDepGraph        Functionality to manage repository dependency
                        graphs
calcProb                Calculate the hypergeometric probability of the
                        subgraph's number of edges.
calcSumProb             Calculate the probability that a subgraph has
                        an unusual number of edges.
clearNode               clearNode
clusterGraph-class      Class "clusterGraph"
clusteringCoefficient   Clustering coefficient of a graph
combineNodes            combineNodes
distGraph-class         Class "distGraph"
duplicatedEdges         duplicatedEdges
edgeData-methods        Get and set attributes for the edges of a graph
                        object
edgeDataDefaults-methods
                        Get and set default attributes for the edges of
                        a graph
edgeMatrix              Compute an Edge Matrix or weight vector for a
                        Graph
edgeWeights             Retrieve the edge weights of a graph
fromGXL-methods         Methods for GXL manipulations in package graph
ftM2int                 Standard labeling of edges with integers
graph-class             Class "graph"
graph2SparseM           Coercion methods between graphs and sparse
                        matrices
graphAM-class           Class "graphAM"
graphExamples           A List Of Example Graphs
graphNEL-class          Class "graphNEL"
inEdges                 Generic Method inEdges
integrinMediatedCellAdhesion
                        KEGG Integrin Mediated Cell Adhesion graph
isAdjacent-methods      Determine if nodes share an edge in a graph
isDirected-methods      Determine if a graph has directed or undirected
                        edges
listEdges               List the Edges of a Graph
mostEdges               Find the node in a graph with the greatest
                        number of edges
nodeData-methods        Get and set attributes for the nodes of a graph
                        object
nodeDataDefaults-methods
                        Get and set default attributes for the nodes of
                        a graph
numNoEdges              Calculate the number of nodes that have an edge
                        list of NULL
randomEGraph            Random Edge Graph
randomGraph             Random Graph
randomNodeGraph         Generate Random Graph with Specified Degree
                        Distribution
removeEdge              removeEdge
removeNode              removeNode
reverseEdgeDirections   Reverse the edges of a directed graph
simpleEdge-class        Class "simpleEdge".
subGraph                Create a Subgraph
toDotR                  Methods for Function toDotR, using R to
                        generate a dot serialization
ugraph                  Underlying Graph
validGraph              Test whether graph object is valid
write.tlp               Write a graph object in a file in the Tulip
                        format
