useDynLib(beadarray)
import(tools, Biobase)

exportClasses(ExpressionSetIllumina, BeadLevelList)
exportMethods(initialize, show,se.exprs, exprs, "[","[[","$", phenoData, pData,sampleNames,samples, "se.exprs<-","exprs<-", dim, assayData, initialize, NoBeads, Detection, backgroundCorrect, createBeadSummaryData, QCInfo)

export(BeadLevelNormalise, imageplot, createBeadSummaryData, DiffScore,
       findAllOutliers, SAMSummary, BeadChipSummary, medianNormalise, rankInvariantNormalise, plotBeadIntensities,
       plotBeadLocations, plotMAXY, plotMA, plotXY,plotOnSAM, readQC,  plotQC, plotQC.figure1, plotQC.figure2, plotQC.figure3, plotQC.figure4, plotQC.figure5, plotQC.figure6, singleQCPlot,readBeadLevelData, readBeadSummaryData, findAllOutliers, backgroundNormalise, imageplot, readCols, readBeadSummaryTargets, readBeadTargets,findBeadStatus, getProbeIntensities, cbind.BeadLevelList, rbind.BeadLevelList, "[.BeadLevelList", print.BeadLevelList)



