BLData                  BeadLevelList for the example experiment
BSData                  ExpressionSetIllumina object for the example
                        experiment
BeadChipSummary         Interactive bead level plotting
BeadLevelList-class     Class "BeadLevelList"
BeadLevelNormalise      Bead Level Normalisation
DiffScore               Illumina's DE statistic
LargeDataObject-class   Large Data Object - class
QC                      Illumina quality control data
backgroundCorrect       Background Correct a BeadLevelList object
backgroundNormalise     Background Normalisation for Bead Summary Data
                        objects
backgroundNormalise, ExpressionSetIllumina-methods
                        Class to Contain Objects Describing
                        High-Throughput Illumina Expression BeadArrays.
cbind.BeadLevelList     Combine BeadLevelList or BeadSummaryList
                        Objects
createBeadSummaryData   Produce bead averages
dim.BeadLevelList       Retrieve the Dimensions of a BeadLevelList
dimnames.BeadLevelList
                        Retrieve the Dimension Names of an
                        BeadLevelList or BeadSummaryList Object
displayTIFFImage        Display part of a TIFF Image
findAllOutliers         Find outliers on array
findBeadStatus          Find Outliers
imageplot               imageplot for BeadArrays object
medianNormalise         Median Normalisation for BeadLevelList objects
plotBeadIntensities     Plot bead intensities
plotBeadLocations       Show bead locations
plotMA                  Show MA plots
plotMAXY                Scatter plots and MA-plots for all specified
                        arrays
plotOnSAM               Show variation between all 96 arrays
plotXY                  XY plots for two samples
rankInvariantNormalise
                        Rank Invariant Normalisation for Bead Summary
                        data
readBeadLevelData       Read BeadArray information into R
readBeadSummaryData     Read bead summary data information into R
readBeadSummaryTargets
                        Create targets object
readBeadTargets         Create targets object
readQC                  Read and plot Illumina quality control
                        information
