map2Systematic            package:y2hStat            R Documentation

_A _f_u_n_c_t_i_o_n _t_h_a_t _m_a_p_s _t_h_e _I_n_t_a_c_t _I_D'_s _t_o _Y_e_a_s_t _S_y_s_t_e_m_a_t_i_c _N_a_m_e_s _i_f
_p_o_s_s_i_b_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     This function takse the Intact ID's maps to the yeast common names
     via intact repository and uses the YEAST package to map the common
     names to the YEAST Systematic names.

_U_s_a_g_e:

     map2Systematic(allProt, tableList, sWAC)

_A_r_g_u_m_e_n_t_s:

 allProt: A character vector of proteins to be mapped

tableList: The tableList element of the output from collectIntactData

    sWAC: A named character vector; the names are SwissProt Accesion
          Codes and the elemnets are the Yeast Systematic names

_V_a_l_u_e:

     The return value is a mapping of each Intact ID to it's respecting
     systematic name.

_A_u_t_h_o_r(_s):

     T Chiang

_E_x_a_m_p_l_e_s:

     data(sWAC2Sys)
     dataL = collectIntactData("EBI-375746")
     sysN = map2Systematic(dataL$allBaits, dataL$tableList, sWAC2Sys)

