findComplexBP            package:y2hStat            R Documentation

_A _f_u_n_c_t_i_o_n _t_o _i_n_t_e_r_s_e_c_t _Y_2_H _d_a_t_a _w_i_t_h _p_r_o_t_e_i_n _c_o_m_p_l_e_x _c_o_m_p_o_s_i_t_i_o_n
_d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     This function takes in the adjacency matrix of y2h data and some
     in silico interactome, ISI, (as the incidence matrix of the
     bi-partite graph). For each complex of the interactome, we can
     generate a new adjacency matrix with only those constituent
     members indexing the rows and columns (if they appear in the
     indexing set of the original adjacency matrix). We can then study
     the y2h relationship on each protein complex.

_U_s_a_g_e:

     findComplexBP(amMat, ISI)

_A_r_g_u_m_e_n_t_s:

   amMat: The adjacency matrix of y2h data

     ISI: The incidence matrix of the bi-partite graph of an in silico
          interactome

_D_e_t_a_i_l_s:

     NB - amMat need not be y2h data, but any data set which is binary
     and can be represented as an adjacency matrix.

_V_a_l_u_e:

     A list of matrices. Each matrix will have the indexing set of its
     row and columns restricted to the intersection of the constituent
     members of each protein complex of the ISI with those proteins in
     the original adjacency matrix.

_A_u_t_h_o_r(_s):

     T Chiang

_E_x_a_m_p_l_e_s:

