Entry: baitsOnly
Aliases: baitsOnly
Keywords: datagen
Description: A function that filters proteins not sampled as baits.
URL: ../../../library/y2hStat/html/baitsOnly.html

Entry: bpMatrix
Aliases: bpMatrix
Keywords: datagen
Description: This function generates the Bait-Prey Matrix for an experiment
URL: ../../../library/y2hStat/html/bpMatrix.html

Entry: collectBPStats
Aliases: collectBPStats
Keywords: datagen
Description: This function enumerates the multiplicity of bait to prey occurances.
URL: ../../../library/y2hStat/html/collectBPStats.html

Entry: collectIntactData
Aliases: collectIntactData
Keywords: datagen
Description: A function that parses the Intact repository for bait to prey affiliation
URL: ../../../library/y2hStat/html/collectIntactData.html

Entry: collectMembranePPI
Aliases: collectMembranePPI
Keywords: datagen
Description: A function to collect the membrane bound protein protein interactions.
URL: ../../../library/y2hStat/html/collectMembranePPI.html

Entry: createBPList
Aliases: createBPList
Keywords: datagen
Description: A function to create the Bait to Prey association list.
URL: ../../../library/y2hStat/html/createBPList.html

Entry: createTables
Aliases: createTables
Keywords: datagen
Description: A function to create a table of the various summary statistics for the Y2H experimental derived data.
URL: ../../../library/y2hStat/html/createTables.html

Entry: degreeStats
Aliases: degreeStats
Keywords: datagen
Description: A function to calculate the various degree statistics on the induced y2h-data derived directed graph.
URL: ../../../library/y2hStat/html/degreeStats.html

Entry: findComplexBP
Aliases: findComplexBP
Keywords: datagen
Description: A function to intersect Y2H data with protein complex composition data
URL: ../../../library/y2hStat/html/findComplexBP.html

Entry: genBPGraph
Aliases: genBPGraph
Keywords: datagen
Description: A function to generate the Y2H induced adjcency matrix or its corresponding graph
URL: ../../../library/y2hStat/html/genBPGraph.html

Entry: inNucleus
Aliases: inNucleus
Keywords: datagen
Description: A function to determine those proteins annotated by the nucleus GO term.
URL: ../../../library/y2hStat/html/inNucleus.html

Entry: intAct2Sys
Aliases: intAct2Sys
Keywords: datagen
Description: A function that maps the Intact ID's to the first YEAST systematic name using the YEAST package
URL: ../../../library/y2hStat/html/intAct2Sys.html

Entry: intActData
Aliases: intActData
Keywords: datasets
Description: A data set documenting the output of collectIntactData
URL: ../../../library/y2hStat/html/intActData.html

Entry: map2Systematic
Aliases: map2Systematic
Keywords: datagen
Description: A function that maps the Intact ID's to Yeast Systematic Names if possible
URL: ../../../library/y2hStat/html/map2Systematic.html

Entry: map2Systematic2
Aliases: map2Systematic2
Keywords: datagen
Description: A secondary function that maps the Intact ID's to Yeast Systematic Names if possible
URL: ../../../library/y2hStat/html/map2Systematic2.html

Entry: membranePPI
Aliases: membranePPI
Keywords: datasets
Description: Binary Interactions for membrane bound proteins
URL: ../../../library/y2hStat/html/membranePPI.html

Entry: nucStat
Aliases: nucStat
Keywords: datagen
Description: A function to restrict the indexing set of bait prey adjcency matrices
URL: ../../../library/y2hStat/html/nucStat.html

Entry: ppipred
Aliases: ppipred
Keywords: datasets
Description: Protein-protein predictions
URL: ../../../library/y2hStat/html/ppipred.html

Entry: recipBP
Aliases: recipBP
Keywords: datagen
Description: A function that returns all preys which were sampled as baits that also detected non-trivial preys.
URL: ../../../library/y2hStat/html/recipBP.html

Entry: sWAC2Sys
Aliases: sWAC2Sys
Keywords: datasets
Description: A data set that contains the translation between Swiss Acension Codes to Gene Systematic Names
URL: ../../../library/y2hStat/html/sWAC2Sys.html

Entry: symInteraction
Aliases: symInteraction
Keywords: datagen
Description: A function that returns symmetric bait to prey interactions from the y2h experiments.
URL: ../../../library/y2hStat/html/symInteraction.html

Entry: tableList
Aliases: tableList
Keywords: datasets
Description: A list of tables for the downloaded and parsed xml files from the IntAct database
URL: ../../../library/y2hStat/html/tableList.html

Entry: y2h
Aliases: y2h
Keywords: datasets
Description: A data set documenting the bait to prey associations for the IntAct repository
URL: ../../../library/y2hStat/html/y2h.html

Entry: y2hSysGW
Aliases: y2hSysGW
Keywords: datasets
Description: A Binary Interaction List for Yeast Proteins via Systematic Names
URL: ../../../library/y2hStat/html/y2hSysGW.html
