comparisonPlot          Plot a vertical layout of panels for the
                        comparison of different along-chromosome
                        profiles.
costMatrix              Segmentation cost matrix
findSegments            Fit a piecewise constant curve to a sequence of
                        numbers -- OBSOLETE, please use function
                        segment instead.
normalizeByReference    Probe-specific normalization of hybridization
                        intensities from a short-oligo microarray
otherStrand             Return the name of the opposite strand
plotAlongChrom          Plot signals and segmentation along a
                        chromosomal region
posMin                  Find the smallest positive number in a vector
readCel2eSet            Read celfiles into an eSet object.
residuals.breakpointsPretend
                        Accessor methods for breakpointsPretend objects
                        - not to be called by the user.
sampleStep              Sampling of ascending numbers to ensure minimal
                        spacing.
segment                 Fit a piecewise constant curve: segmentation by
                        dynamic programming
segmentation-class      The class segmentation represents a
                        segmentation result.
tilingArray-package     tilingArray package overview
