ddCtSet-class             package:prada             R Documentation

_C_l_a_s_s _f_o_r _s_t_o_r_a_g_e _o_f _r_e_l_a_t_i_v_e _r_t_P_C_R _r_e_s_u_l_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     A subclass extending virtual class 'eSet' designed to store the
     raw data and results from a ddCt analysis of rtPCR data.

_C_r_e_a_t_i_n_g _O_b_j_e_c_t_s:

     see 'eSet' for details '  new("ddCtSet",'
      '    phenoData = ....,   # object of class
     \code{AnnotatedDataFrame}'
      '    experimentData  = .... # object of class \code{MIAME}'
      '    annotation = ....  # object of class character'
      '    assayData = ....  # object of class assayData'
      '  )'
      The 'assayData' slot can be instantiated using function
     'assayDataNew'.

_S_l_o_t_s:

     Inherited from 'eSet':

     '_a_s_s_a_y_D_a_t_a': Contains matrices with equal dimensions, and with
          column number equal to 'nrow(phenoData)'. 'assayData' must
          contain matrices 'dCt','dCt.error','Ct.error',
          'ddCt','ddCt.error','Difference','level.err',
          'number','numberNA','Plate'. See'ddCt' for details.
          Class:'AssayData'

     '_p_h_e_n_o_D_a_t_a': See 'eSet'

     '_e_x_p_e_r_i_m_e_n_t_D_a_t_a': See 'eSet'

     '_a_n_n_o_t_a_t_i_o_n': See 'eSet'

_M_e_t_h_o_d_s:

     _e_x_p_r_s, _e_x_p_r_s<- get or set expression data

     _i_n_i_t_i_a_l_i_z_e constructor, not to be called by the user

_A_u_t_h_o_r(_s):

     Florian Hahne

