Entry: hiv
Aliases: hiv
Keywords: datasets
Description: Microarray intensity expression levels for HIV type 1 infection of CD4+ T-Cell lines
URL: ../../../library/nudge/html/hiv.html

Entry: like
Aliases: like
Keywords: datasets
Description: Microarray intensity expression levels for like-like data
URL: ../../../library/nudge/html/like.html

Entry: neg.contr
Aliases: neg.contr
Keywords: datasets
Description: Indicator of known truly non differentially expressed genes in the hiv dataset
URL: ../../../library/nudge/html/neg.contr.html

Entry: norm1a
Aliases: norm1a
Keywords: loess
Description: Function for normalizing the mean of single replicate log ratios
URL: ../../../library/nudge/html/norm1a.html

Entry: norm1b
Aliases: norm1b
Keywords: loess
Description: Function for normalizing the mean and variance (or just the variance) of single replicate log ratios
URL: ../../../library/nudge/html/norm1b.html

Entry: norm1c
Aliases: norm1c
Keywords: loess
Description: Function for normalizing the mean of average-across-replicates log ratios
URL: ../../../library/nudge/html/norm1c.html

Entry: norm1d
Aliases: norm1d
Keywords: loess
Description: Function for normalizing the mean and variance of average-across-replicates log ratios
URL: ../../../library/nudge/html/norm1d.html

Entry: norm2c
Aliases: norm2c
Keywords: loess
Description: Function for normalizing the mean of average-across-replicates log ratio differences
URL: ../../../library/nudge/html/norm2c.html

Entry: norm2d
Aliases: norm2d
Keywords: loess
Description: Function for normalizing the mean and variance of average-across-replicates log ratio differences
URL: ../../../library/nudge/html/norm2d.html

Entry: nudge1
Aliases: nudge1
Keywords: cluster loess
Description: Function for normalizing data, fitting a normal-uniform mixture and estimating probabilities of differential expression in the case where the two samples are being compared directly
URL: ../../../library/nudge/html/nudge1.html

Entry: nudge2
Aliases: nudge2
Keywords: cluster loess
Description: Function for normalizing data, fitting a normal-uniform mixture and estimating probabilities of differential expression in the case where the two samples are being compared indirectly through a common reference sample
URL: ../../../library/nudge/html/nudge2.html

Entry: pos.contr
Aliases: pos.contr
Keywords: datasets
Description: Indicator of known truly differentially expressed genes in the hiv dataset
URL: ../../../library/nudge/html/pos.contr.html
