normalize              package:codelink              R Documentation

_N_o_r_m_a_l_i_z_a_t_i_o_n _w_r_a_p_p_e_r _f_o_r _C_o_d_e_l_i_n_k _o_b_j_e_c_t_s.

_D_e_s_c_r_i_p_t_i_o_n:

     Takes a Codelink object and applies normalization to intensity
     values.

_U_s_a_g_e:

         normalize(object, method="quantiles", log.it=TRUE, preserve=FALSE)

_A_r_g_u_m_e_n_t_s:

  object: an object of class "Codelink".

  method: method to use in normalization.

  log.it: logical; if data should be log2.

preserve: logical; if Ri slot should be preserved.

_D_e_t_a_i_l_s:

_V_a_l_u_e:

     A Codelink object with normalized intensity values.

_N_o_t_e:

_A_u_t_h_o_r(_s):

     Diego Dez Ruiz

_S_e_e _A_l_s_o:

_E_x_a_m_p_l_e_s:

     #       data(codelink.example)
             # Background correction.
     #       codelink.example <- bkgdCorrect(codelink.example,
     #        method="half")
             # Normalization.
     #       codelink.example <- normalize(codelink.example,
     #        method="quantile")

