Entry: ROC
Aliases: ROC plot.ROC lines.ROC
Keywords: univar
Description: Creates an object of class "ROC" which can be plotted as a ROC curve
URL: ../../../library/cellHTS/html/ROC.html

Entry: annotate
Aliases: annotate annotate.cellHTS
Keywords: manip
Description: Annotates the gene IDs of a given cellHTS object
URL: ../../../library/cellHTS/html/annotate.html

Entry: bdgpbiomart
Aliases: bdgpbiomart
Keywords: datasets
Description: Dataset with annotation of CG identifiers
URL: ../../../library/cellHTS/html/bdgpbiomart.html

Entry: configure
Aliases: configure configure.cellHTS
Keywords: manip
Description: Configures the plates and plate result files
URL: ../../../library/cellHTS/html/configure.html

Entry: imageScreen
Aliases: imageScreen
Keywords: manip
Description: Experiment-wide quality control plot of a cellHTS object
URL: ../../../library/cellHTS/html/imageScreen.html

Entry: normalizePlateMedian
Aliases: normalizePlateMedian
Keywords: manip
Description: Median normalization of the data and data transformation
URL: ../../../library/cellHTS/html/normalizePlateMedian.html

Entry: normalizeRatio
Aliases: normalizeRatio
Keywords: manip
Description: Normalization of two-color data and data transformation
URL: ../../../library/cellHTS/html/normalizeRatio.html

Entry: oneRowPerId
Aliases: oneRowPerId
Keywords: manip
Description: Rearrange dataframe entries such that there is exactly one row per ID.
URL: ../../../library/cellHTS/html/oneRowPerId.html

Entry: print.cellHTS
Aliases: print.cellHTS
Keywords: print
Description: Printing cellHTS objects
URL: ../../../library/cellHTS/html/print.cellHTS.html

Entry: readPlateData
Aliases: readPlateData
Keywords: manip
Description: Read a collection of plate reader data files
URL: ../../../library/cellHTS/html/readPlateData.html

Entry: summarizeReplicates
Aliases: summarizeReplicates
Keywords: manip
Description: Summarizes between normalized replicate values given in a cellHTS object, obtaining a single z-score for each probe
URL: ../../../library/cellHTS/html/summarizeReplicates.html

Entry: writeReport
Aliases: writeReport
Keywords: manip
Description: Create a directory with HTML pages of linked tables and plots documenting the contents of a cellHTS object
URL: ../../../library/cellHTS/html/writeReport.html
