readAp                package:applera                R Documentation

_F_u_n_c_t_i_o_n _t_o _l_o_a_d _a_p_p_l_e_r_a _a_r_r_a_y _d_a_t_a _i_n _a _a_p_p_l_e_r_a _o_b_j_e_c_t

_D_e_s_c_r_i_p_t_i_o_n:

     The function 'readAp' expects two variables a phenodata file name,
     containing, as rownames, the applera file names and an organism
     string (Hs, Mm, Rn) that define the characteristics of the arrays
     to be loaded. The function will load in an applera object all the
     files present in the working directory having the same names as
     the rownames of the phenoData file. To be loaded the results from
     the AB1700 analysis has to be organized to have a file for each
     array result. The file should contain in the following order:
     ProbeID, GeneID, Signal, SDEV, CV, SN and Flags.

_U_s_a_g_e:

     readAp(pd, organism)

_A_r_g_u_m_e_n_t_s:

      pd: the name of the phenodata file

organism: "Hs.v1" or "Hs.v2" for human, "Mm" for mouse or "Rn" for rat

_V_a_l_u_e:

     An object of class "applera".

_A_u_t_h_o_r(_s):

     Raffaele A. Calogero <Raffaele.Calogero@unito.it>, francesca
     Cordero <fcordero@di.unito.it>

_S_e_e _A_l_s_o:

     'applera-class' for the class of the return value.

_E_x_a_m_p_l_e_s:

     #

