c9dc0871d31338939ac98f1df4d1f420 *CONTENTS
4d9e47a2bb42ec787ecb2d86c661d8eb *DESCRIPTION
65090940ea8250958105633c87de41b4 *INDEX
6f00ba391f74c5dc01747cbc2770b1a4 *Meta/Rd.rds
866a5f65f59b06921dc77515984276de *Meta/data.rds
cbcf038b7a61b1009cf0dba629b4dcf2 *Meta/hsearch.rds
6535473b4d4fcf73409b541c1342ee65 *Meta/nsInfo.rds
0cfe074bd915099a2eb5d3df2b464ade *Meta/package.rds
7b9af15e52f54b192a1fca37238bfe96 *Meta/vignette.rds
0e3ed78cdb4d42684f7ddfd45412dcd7 *NAMESPACE
9fb08e2ba3a7093e0ba7144ace6f271a *R-ex/computeConfInt.R
ce2ffdf49475187867e2a9d0ee48da1e *R-ex/confIntSegmentation.R
fd80d2a33ccd1e37fe7822e7e2fd1fd5 *R-ex/costMatrix.R
a8c0595d1d0e0a7dba6bd303e5b4ed3f *R-ex/findsegments.R
c0852fc8f7bb899567d1914d77b83f40 *R-ex/getAttributeField.R
8f3d174888c5a0883a535066161d3dd0 *R-ex/isWithinInterval.R
fcee24b1d24eabef157754329fd45f50 *R-ex/otherStrand.R
2bf11d705e61a6dbe6a0f71fb2439e82 *R-ex/plotAlongChrom.R
bd865ce0f2346ff93a45dc91f3ec8e0a *R-ex/plotSegmentation.R
d92dc0a0b5bee4502cb2c41b12b34a06 *R-ex/posMin.R
ed0ded9be0ad53ac660140edddf06bf0 *R-ex/qualityReport.R
046126e8ae906ccbb4ef8146805cb04d *R-ex/sampleStep.R
a8432e965fa77553246b5de8e508605d *R-ex/scoreSegments.R
0ae3f2cef5c1511b3f189a45af4edc17 *R-ex/showDens.R
6ec72988f200f4d285d85406f64c1664 *R-ex/yeastFeatures.R
17d68c9f5a6bd74b0b54dac90a4b209b *R/all.rda
c3c3df66278d1d78c20620060b84e479 *R/tilingArray
499c1bb25fbc1bd6d09768f2ec069133 *chtml/tilingArray.chm
8a976a55f83d98c0c9a9105aabd713cd *data/yeastFeatures.R
9cfff8edd684ab858af91eaefa335dad *doc/Rplots.ps
6224d2e0085115b6a67b589431744e28 *doc/findsegments.Rnw
2a7739af84d9f1cf75266f5294a9a425 *doc/findsegments.pdf
3a7e7d27c0fc49748d89e08c1c93947b *doc/index.html
f9dc992f0c638da2be46dcdee8a17d20 *doc/workflowOverview.Rnw
21d7080010cded4a16ca374c28c36e0d *doc/workflowOverview.pdf
1239519c520838b0e6066b4411cc3eb0 *help/AnIndex
8fd0e5f4da8aaa1c02e74cc6fba09a20 *help/computeConfInt
70666e75d5cbae93de9aac7cb07aadae *help/confIntSegmentation
c8ce24b984a648da5136d1f66a059a74 *help/costMatrix
fed6ec8b9c617cb54295ec161a36aaa5 *help/findsegments
f82da95537396427dd11eeb0aea7094c *help/getAttributeField
bbab6b4bd812fbbd5c0323d9b88cc599 *help/isWithinInterval
2eae110f9bca57042e78adb93ec9d251 *help/otherStrand
c94b74d9ef7da05ec6231f1db3e319d4 *help/plotAlongChrom
ef839b811b06f1af643140518d012e33 *help/plotSegmentation
8ab687a541f43bf4b220f8bef4a80c53 *help/posMin
ef0f6759a1d4b8a9394d0c68b4b1f165 *help/qualityReport
8edcf9369581675958d93d12b87cf5da *help/sampleStep
f845c0a000e0a7c44f77d787cc675af0 *help/scoreSegments
fc1e7505f41d820c15d96673c3bbf66f *help/showDens
62511ff4cc0d564c10266913a7c442bb *help/yeastFeatures
07eac5b2edb1488b2ee66df0554bada7 *html/00Index.html
572f6ba3283f24c9ddd5054661a97b3c *html/computeConfInt.html
077bf182ab8d2ec68abdbb95842247bf *html/confIntSegmentation.html
07965de2c3793faa3ed5839d57f819cd *html/costMatrix.html
f65bf835ecf9d43c878f8c0923478bd3 *html/findsegments.html
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1e2b239a1f5c5c97469784f970748694 *html/isWithinInterval.html
2d37b19e29c1f5f5dacad56f1c981d34 *html/otherStrand.html
47c2b861bdb2c9ce634443513b168e8a *html/plotAlongChrom.html
489842105eaa6a4c9bb9be5a0db212f2 *html/plotSegmentation.html
47c5e59291340db6d52c66d4a56b79ab *html/posMin.html
121b72b8d9f7225642e0c62daedd0955 *html/qualityReport.html
3376924df65ba01716ebeaae990fb4b6 *html/sampleStep.html
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3a87583c3fe4c3ac4fae534f549f975f *html/showDens.html
75090e5d7aa5494bafe63a83c566263d *html/yeastFeatures.html
29a9a0dc44a8a8b341d207d8cf0c82d1 *latex/computeConfInt.tex
4ba9ff94d434bc50488960a0538aad01 *latex/confIntSegmentation.tex
6a55f69ac452cfecc05d8d14c6fb18c5 *latex/costMatrix.tex
d475caf7a8c513b3e8647ef29d55a44d *latex/findsegments.tex
1e43deac1bc21364f95415f0294c96ed *latex/getAttributeField.tex
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212f56939a89d539dac66a50827e1108 *latex/otherStrand.tex
a927c275a428ade4191210d43bcb1cad *latex/plotAlongChrom.tex
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3a9a1dceec4fac759f95af131ef92731 *latex/qualityReport.tex
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18e0600fab8e9b1157d01ef8a2f68bc0 *latex/showDens.tex
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698418b1bdc1ee725ee7a30b1efceaa9 *libs/tilingArray.dll
baca2db812226b69c458d8c9bbe43f14 *man/tilingArray.Rd.gz
0deed8defbbbae269e6d87728899a2dd *scripts/Figures/INDEX
1170cc3affabdeee88ff841b3b61730a *scripts/Figures/fig_norm.R
06fc77b57784f08dfdf07b735c102058 *scripts/GOHyperG.R
b04042b7da6bba48906e35ab97edbd18 *scripts/antisense-GO.R
6191af722c8b16352d628b896739ecb3 *scripts/antisense-UTR.R
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8192a11182edf259444f3d046ccb8d29 *scripts/blast_Spombe.R
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370b02323cc43cd7ec30699130d58769 *scripts/calcThreshold.R
523841b22b9b1f2a2cf1e968685bef07 *scripts/categorizeSegments.R
1f7920286aca5d72717e249160561d4f *scripts/confInt.R
30787918590c1479a571798fc5960d21 *scripts/doQualityReport.R
3ee95e3abce230ddb620441321b2dc3c *scripts/expressedFeatures.R
66c22639276da4ab58674ca01a2ca8e4 *scripts/fig1.R
4f05c52fd53db485e1010a06200950db *scripts/findORF.R
e5982a11cb7b6254197514ee437203b9 *scripts/geneDensity.R
fec16080645ba51280217e44231c4bff *scripts/lowTranscribedRegions.R
204207532202aa04134e6d7122fc86a8 *scripts/makeProbeAnno.R
11131c76ed7b317a3ef50e3db36da394 *scripts/mapProbesToGenome.sh
3e0b4c4e986f2854f8112477a30f916d *scripts/normalize.R
464d7dff27f2746ecdbedc51391713a2 *scripts/plotrtpcr.R
c4c11fe18864865dd92bf10d7d6b90df *scripts/probeSignal.R
8e63c6c4079978a9ade74152f94805ae *scripts/readSegments.R
b0fdfe5bbed743bb36a3754081e3326a *scripts/readcels.R
e8278270cc6044b6c183211d94f314cc *scripts/scoreSegments.R
cb788a5fba0e683e63a2a5cc52851e93 *scripts/segConservation.R
d52f7608555114bbdde9a97b57193378 *scripts/segSequencesWrite.R
b489f3cb57fd3c93fcec128e469df226 *scripts/segVariance.Rnw
711153b145b611e45090a0849a3010b1 *scripts/segment.R
ec09638e01e5fd3d07353e9247193245 *scripts/segmentDuplication.R
f08d04adfd53e65453e73e42db426d63 *scripts/showDens.R
3daa6e83e66ff1008400f6fa9bd26162 *scripts/table-ncRNAs.R
650c6cd19dcb2c5f04c0291fa10981ed *scripts/tableSegments.R
cda7bbbf237e3d0b6c901bbad0626570 *scripts/utrmap.R
be452938ed19aaf595270e6a2cea4bac *scripts/viewAllSegs.R
dfed4a34d7592453d2d9cf0a209d4cb5 *scripts/viewSegmentation.R
f43a9909557b3dc28afd79da517544ae *scripts/weakProbesCluster.R
67334bc7bd958a14381e528ae437c651 *scripts/writeProbeSeqsFasta.R
b5af7d21c289ec396998bfebfebb9653 *scripts/writeSegmentTable.R
