Entry: computeConfInt
Aliases: computeConfInt
Keywords: internal
Description: Compute Confidence Intervals for Breakpoints
URL: ../../../library/tilingArray/html/computeConfInt.html

Entry: confint.segmentation
Aliases: confint.segmentation
Keywords: manip
Description: Compute Bai's confidence intervals for specified segmentations
URL: ../../../library/tilingArray/html/confIntSegmentation.html

Entry: costMatrix
Aliases: costMatrix
Keywords: manip
Description: Segmentation cost matrix
URL: ../../../library/tilingArray/html/costMatrix.html

Entry: findSegments
Aliases: findSegments
Keywords: manip
Description: Fit a piecewise constant curve to a sequence of numbers
URL: ../../../library/tilingArray/html/findsegments.html

Entry: getAttributeField
Aliases: getAttributeField
Keywords: manip
Description: Extract the value of a certain field out of a character vector such as in the "attributes" column of a GFF table.
URL: ../../../library/tilingArray/html/getAttributeField.html

Entry: isWithinInterval
Aliases: isWithinInterval
Keywords: manip
Description: Test whether a vector of numbers is within a vector of intervals
URL: ../../../library/tilingArray/html/isWithinInterval.html

Entry: otherStrand
Aliases: otherStrand
Keywords: manip
Description: Return the name of the opposite strand
URL: ../../../library/tilingArray/html/otherStrand.html

Entry: plotAlongChrom
Aliases: plotAlongChrom
Keywords: hplot
Description: Plot the results of segmentation along a chromosomal region
URL: ../../../library/tilingArray/html/plotAlongChrom.html

Entry: plot.segmentation
Aliases: plot.segmentation
Keywords: hplot
Description: Plot result of segmentation algorithm
URL: ../../../library/tilingArray/html/plotSegmentation.html

Entry: posMin
Aliases: posMin
Keywords: manip
Description: Find the smallest positive number in a vector
URL: ../../../library/tilingArray/html/posMin.html

Entry: qualityReport
Aliases: qualityReport
Keywords: hplot manip
Description: Assess quality of normalized poly-A-RNA samples
URL: ../../../library/tilingArray/html/qualityReport.html

Entry: sampleStep
Aliases: sampleStep
Keywords: manip
Description: Sampling of ascending numbers to ensure minimal spacing.
URL: ../../../library/tilingArray/html/sampleStep.html

Entry: scoreSegments
Aliases: scoreSegments
Keywords: manip
Description: Score segments
URL: ../../../library/tilingArray/html/scoreSegments.html

Entry: showDens
Aliases: showDens
Keywords: internal
Description: Plot function for more than one density
URL: ../../../library/tilingArray/html/showDens.html

Entry: yeastFeatures
Aliases: yeastFeatures
Keywords: datasets
Description: A data.frame with metadata about the features in SGD GFF files
URL: ../../../library/tilingArray/html/yeastFeatures.html
