"FCS-class"             Class "FCS" : Flow Cytometry Standard
"FCSgate-class"         Class "FCSgate" Flow Cytometry Standard
                        extension to gating
"FCSggobi-class"        Class "FCSggobi" : Dynamic Plots
"FCSmetadata-class"     Class "FCSmetadata" Metadata portion of a Flow
                        Cytometry Standard object
"FCSsummary-class"      Class "FCSsummary" Summary object for a
                        "FCS-class"
"[-methods"             Extraction of slot information using "["
"[<--methods"           Replacement and/or Addition of new slot or
                        indexed elements using "[<-"
"[[-methods"            Extraction of slot information using "[["
"[[<--methods"          Replacement and/or Addition of new slot or
                        indexed elements using "[[<-"
"addParameter-methods"
                        Add a column data variable to the data of a FCS
                        object
"checkvars-methods"     Checks the ranges, dimensions, and names of the
                        metadata based on the current data of an FCS
                        R-object.
"coerce-methods"        Coercing an object class to another class
"dim.FCS-methods"       Obtaining the dimensions of the data of an
                        "FCS-class" object
"equals-methods"        Checks equality of two "FCS-class" objects
"fixvars-methods"       Checks and fixes the ranges, dimensions, and
                        names of the metadata based on the current data
                        of an FCS R-object.
"fluors-methods"        Obtaining the Data of Fluorescence Measurements
                        from a FCS object
"ggobi-methods"         Dynamic Plotting and Viewing the "FCS" object
                        data high-dimensionally
"metaData-methods"      Extraction of the FCSmetadata-class object from
                        a FCS-class object
"plot-methods"          Graphical representation of an object
"print-methods"         Printing an object
"show-methods"          Showing an object
"summary-methods"       Summary of object
ContourScatterPlot      Image and Contour Bivariate Plot
FHCRC.HVTNFCS           Fred Hutchinson Cancer Research Center
                        Sequential Gating Procedure proposed by Julie
                        McElrath's Lab
ImageParCoord           Image Parallel Coordinates Plot: Joint and
                        marginal
KS.flowcytest           Kolmogorov Smirnoff Test 2-sample
PercentPos.FCS          Calculate the Percent Positive given a
                        percentile
ProbBin.FCS             ProbBin.FCS R-object: Probability binning of 2
                        samples
ProbBin.flowcytest      Test the equivalence of two univariate sample
                        distributions by using Probability Binning and
                        plots the probability-binned histograms of the
                        two samples
ROC.FCS                 ROC (Receiver Operating Characteristic) Curve:
                        Percentage Positives for Flow Cytometry data
VRC.HVTNFCS             Sequential Gating Scheme from Vaccine Research
                        Center (VRC), NIH, Bethesda, MD; Mario
                        Roederer, PhD
WLR.flowcytest          Weighted Logrank Test for testing the
                        differences between time-to-event, survival
                        curves
add.parallel.coordinates
                        Add a parallel coordinates line to an existing
                        plot
boxplot.FCS             Create boxplots one parameter of one (or more)
                        FCS object(s)
breakpoints.ProbBin     Obtain break points for Probability binning
convertS3toS4           Converts S3 class FCS object to S4 class FCS
                        object
createGate              Gating of a FCS object: Making a
                        Gating/Selection index column for subsequent
                        extraction
extractGateHistory      Extracting the gating information from the
                        history
extractGatedData        Extract the data of a FCS object using a
                        specified Gating Index
fcs.type                Objects providing parameters for the raw FCS
                        file types
gate.IPC                Interactive gating of an Image Parallel
                        Coordinates Plot
legend.CSP              Makes a rough legend for the ContourScatterPlot
make.grid               Make a matrix of values allocated in a two
                        dimensional grid
pairs.CSP               Contour/Hexbin Scatterplot Matrices
parallel.coordinates    Parallel coordinates: Plotting each observation
                        across all variables
pkci2.flowcytest        Testing the difference of upper-tail
                        distributions of two samples
plot.ProbBin.FCS        Plots a ProbBin.FCS object
plotECDF.FCS            Create a empirical cumulative distribution plot
                        for one (or more) parameter(s) of one (or more)
                        FCS object(s)
plotdensity.FCS         Create density plots one parameter of one (or
                        more) FCS object(s)
plotvar.FCS             Making Univariate/Bivariate plots of the column
                        variables of a FCS object
read.FCS                Reading in a raw binary Flow Cytometry Standard
                        (FCS) file
read.series.FCS         Reading a serie of raw binary Flow Cytometry
                        Standard (FCS) files
rect.box.idx            Superimposes a rectangle on an existing plot
                        given positional indicies
runflowcytests          Tests the equivalence of two univariate sample
                        distributions by using four different methods
showgate.FCS            Showing the gate and the datapoints within the
                        gate on a prevous plot
summary.ProbBin.FCS     Chi-Squared/Standard Normal Approximation
                        Summary Statistics for a ProbBin.FCS object
xgobi.FCS               XGobi: Dynamic Graphics for Data Analysis on
                        FCS R objects
