DFS                     Depth First Search
aM2bpG                  Coercions between matrix and graph
                        representations
acc-methods             Methods for Accessibility Lists
addEdge                 addEdge
addNode                 addNode
adj-methods             Methods for finding the adjacency list for
                        selected nodes.
apopGraph               KEGG apoptosis pathway graph
asGraphProperty         Generic for converting input to graph property
                        list
attrData-class          Class "attrData"
attrDataItem-methods    Get and set attributes values for items in an
                        attrData object
attrDefaults-methods    Get and set the default attributes of an
                        attrData object
aveNumEdges             Calculate the average number of edges in a
                        graph
biocRepos               A graph representing the Bioconductor package
                        repository
boundary                Returns the Boundary between a Graph and a
                        SubGraph
buildRepDepGraph        Functionality to manage repository dependency
                        graphs
calcProb                Calculate the hypergeometric probability of the
                        subgraph's number of edges.
calcSumProb             Calculate the probability that a subgraph has
                        an unusual number of edges.
clearNode               clearNode
clusterGraph-class      Class "clusterGraph"
clusteringCoefficient   Clustering coefficient of a graph
combineNodes            combineNodes
distGraph-class         Class "distGraph"
duplicatedEdges         duplicatedEdges
edgeData-methods        Get and set attributes for the edges of a graph
                        object
edgeDataDefaults-methods
                        Get and set default attributes for the edges of
                        a graph
edgeMatrix              Compute an Edge Matrix or weight vector for a
                        Graph
edgeWeights             Retrieve the edge weights for specified
                        indices.
fromGXL-methods         Methods for GXL manipulations in package graph
ftM2int                 Standard labeling of edges with integers
gEdge-class             Class "gEdge"
gNode-class             Class "gNode"
generalGraph-class      Class "generalGraph" ~~~
graph-class             Class "graph"
graph2SparseM           Coercion methods between graphs and sparse
                        matrices
graphAM-class           Class "graphAM"
graphExamples           A List Of Example Graphs
graphH-class            Class "graphH"
graphID-class           Unique Graph Identifications
graphNEL-class          Class "graphNEL"
hashtable               Create a hashtable
hashtable-class         Class "hashtable"
inEdges                 inEdges
integrinMediatedCellAdhesion
                        KEGG Integrin Mediated Cell Adhesion graph
isAdjacent-methods      Determine if nodes share an edge in a graph
isDirected-methods      Determine if a graph has directed or undirected
                        edges
listEdges               List the Edges of a Graph
mostEdges               Find the node in a graph with the greatest
                        number of edges
nodeData-methods        ~~ Methods for Function nodeData in Package
                        'graph' ~~
nodeDataDefaults-methods
                        Get and set default attributes for the nodes of
                        a graph
numNoEdges              Calculate the number of nodes that have an edge
                        list of NULL
propertyHolder-class    Class "propertyHolder"
randomEGraph            Random Edge Graph
randomGraph             Random Graph
randomNodeGraph         Generate a Graph with specified degree
                        distribution.
removeEdge              removeEdge
removeNode              removeNode
simpleEdge-class        Class "simpleEdge".
subGraph                Create a Subgraph
toDotR                  Methods for Function toDotR, using R to
                        generate a dot serialization
ugraph                  Underlying Graph
validGraph              Test whether graph object is valid
write.tlp               Write a graph object in a file in the Tulip
                        format
