normalize_Rawfiles           package:RLMM           R Documentation

_N_o_r_m_a_l_i_z_e _P_M _I_n_t_e_n_s_i_t_y _v_a_l_u_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Given a directory with *.raw files, it will normalize the PMA and
     PMB intensities in  each file using Xba.CQV (composite quantile
     vector) and return the normalized  values written to *.norm files
     corresponding to its *.raw files.  EG: If two *.raw files are
     used, two *.norm files will be returned. This normalization simply
     puts the probe data on the same scale as the training data.

_U_s_a_g_e:

     normalize_Rawfiles(cqvfile = "",
                        probefiledir = getwd())

_A_r_g_u_m_e_n_t_s:

 cqvfile: Character string specifying the CQV filename (e.g., Xba.CQV)
          (required)

probefiledir: Character string specifying location of the *.raw files
          and *.norm files (optional)

_A_u_t_h_o_r(_s):

     Nusrat Rabbee <nrabbee@post.harvard.edu>, Gary Wong
     <wongg62@gmail.com>

