AtoR                  package:GeneR                  R Documentation

_C_o_n_v_e_r_s_i_o_n _o_f _a_d_d_r_e_s_s_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Convert addresses of a sequence.

_U_s_a_g_e:

     AtoR(adrabs, seqno=0)
     AtoT(adrabs, seqno=0)
     RtoA(adrrel, seqno=0)
     RtoT(adrrel, seqno=0)
     TtoA(adrver, seqno=0)
     TtoR(adrver, seqno=0)

_A_r_g_u_m_e_n_t_s:

  adrabs: Integers (vector). Absolute Addresses 

  adrrel: Integers (vector). Relative Addresses

  adrver: Integers (vector). Real Addresses

   seqno: Integer sequence number  (bufseq)

_D_e_t_a_i_l_s:

     All details on addresses and globals variables are on page
     'globals'.

_V_a_l_u_e:

     Vector with new addresses

_N_o_t_e:

     All results depends on value of Strand. See: 'setStrand',
     'getStrand'.

_A_u_t_h_o_r(_s):

     L. Cottret

_S_e_e _A_l_s_o:

     'AtoT', 'RtoA', 'RtoT', 'TtoA', 'TtoR','setStrand', 'getStrand'

_E_x_a_m_p_l_e_s:

     s<-"cgtagtagctagctagctagctagctagc"
     placeString (s, seqno=0)
     # s of size 30
     address <- c(4,20)

     # With same strand: it does nothing
     setStrand(1)
     AtoR(address)
     #[1] 26 10

     # On reverse strand:
     setStrand(0)
     AtoR(address)
     #[1]  4 20

