Package: rMAT
Type: Package
Title: R implementation from MAT program to normalize and analyze
        tiling arrays and ChIP-chip data.
Version: 2.2.1
Author: Charles Cheung and Arnaud Droit and Raphael Gottardo
Maintainer: Arnaud Droit <arnaud.droit@ircm.qc.ca> and Raphael Gottardo
        <raphael.gottardo@ircm.qc.ca>
Description: This package is an R version of the package MAT and
        contains functions to parse and merge Affymetrix BPMAP and CEL
        tiling array files (using C++ based Fusion SDK and Bioconductor
        package affxparser), normalize tiling arrays using sequence
        specific models, detect enriched regions from ChIP-chip
        experiments. Note: users should have GSL anf GenomeGraphs
        installed. Windows users: 'consult the README file available in
        the inst directory of the source distribution for necessary
        configuration instructions'. Snow Leopard users can take
        advantage of increase speed with Grand Central Dispatch!
Year: 2009.
License: Artistic-2.0
Depends: R(>= 2.9.0), IRanges
Imports: Biobase (>= 2.5.5), affxparser, methods, IRanges
Suggests: GenomeGraphs, rtracklayer
biocViews: Microarray, Preprocessing, Statistics
URL: http://www.rglab.org
Packaged: 2010-03-27 10:17:23 UTC; biocbuild
Built: R 2.10.1; i386-pc-mingw32; 2010-03-27 14:12:53 UTC; windows
