Package: SNPchip
Version: 1.10.0
Title: Classes and Methods for high throughput SNP chip data
Author: Robert Scharpf <rscharpf@jhsph.edu> and Ingo Ruczinski
Maintainer: Robert Scharpf <rscharpf@jhsph.edu>
Depends: R (>= 2.6.0), Biobase (>= 2.5.5), methods, oligoClasses (>=
        1.7.8), graphics
Imports: Biobase (>= 2.5.5), graphics, grDevices, methods, oligoClasses
        (>= 1.7.8), stats, utils
Suggests: RSQLite, VanillaICE, RColorBrewer, genefilter,
        pd.mapping50k.xba240
Description: This package defines classes and functions for plotting
        copy number and genotype in high throughput SNP platforms such
        as Affymetrix and Illumina.  In particular, SNPchip is a useful
        add-on to the oligo package for visualizing SNP-level estimates
        after pre-processing.
License: LGPL (>= 2)
LazyLoad: yes
Collate: AllClasses.R AllGenerics.R methods-ParESet.R
        initialize-methods.R methods-SnpLevelSet.R methods-SnpCallSet.R
        methods-AnnotatedDataFrame.R methods-oligoSnpSet.R
        methods-RatioSnpSet.R plotSnp-methods.R methods-list.R
        functions.R zzz.R
biocViews: CopyNumberVariants, SNP, GeneticVariability, Visualization
URL: http://www.biostat.jhsph.edu/~iruczins/software/snpchip.html
Packaged: 2009-10-28 09:34:35 UTC; biocbuild
Built: R 2.10.0; ; 2009-10-28 14:45:39 UTC; windows
