plotAlongChrom          package:tilingArray          R Documentation

_P_l_o_t _m_i_c_r_o_a_r_r_a_y _d_a_t_a _a_n_d _a_n_n_o_t_a_t_i_o_n _f_e_a_t_u_r_e_s _a_l_o_n_g _a _c_h_r_o_m_o_s_o_m_a_l _r_e_g_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     Plot microarray data and annotation features along a chromosomal
     region

_U_s_a_g_e:

     plotAlongChrom(y, hybeType, chr, from, to, extend=0, gff, chrSeqname,
       probeAnno, probeLength=25)

_A_r_g_u_m_e_n_t_s:

       y: vector of real numbers, one for each probe on the array.

hybeType: character of length 1: either 'Reverse' or 'Direct'.

     chr: character or integer of length 1: which chromosome?

    from: integer of length 1: start coordinate

      to: integer of length 1: end coordinate

  extend: integer of length 1: extend start and end by how much

     gff: data frame with genome annotation from the GFF file.

chrSeqname: character vector whose i-th element is the name of the i-th
          chromosome, as used in the 'seqname' column of the 'gff'
          table.

probeAnno: a probe annotation environment.

probeLength: integer of length 1: length of the microarray probes.

_D_e_t_a_i_l_s:

     No details.

_A_u_t_h_o_r(_s):

     Wolfgang Huber <huber@ebi.ac.uk>

_E_x_a_m_p_l_e_s:

       ## TO DO
      

