a7da64dd3962ab84cde666b8fe166ec5 *CONTENTS
7b3d2d706c250345ca70244fa2f3fd2b *DESCRIPTION
8d1a54fcddf388c74090f9c86b6e84fd *INDEX
985728fb3294ab942761653bdd1fd994 *Meta/Rd.rds
a7d73694309f1c6ef5dac3bad6c5184d *Meta/hsearch.rds
6a97ebc9a6a5e319eb37a6e3b71f21ea *Meta/nsInfo.rds
1ebc2f366a91d5cc08aee61443b674d8 *Meta/package.rds
facd77fb2104f36e62b828b7be27b466 *Meta/vignette.rds
1f35e66de77e3243724a958d4be99975 *NAMESPACE
fd80d2a33ccd1e37fe7822e7e2fd1fd5 *R-ex/costMatrix.R
a8c0595d1d0e0a7dba6bd303e5b4ed3f *R-ex/findsegments.R
c0852fc8f7bb899567d1914d77b83f40 *R-ex/getAttributeField.R
8f3d174888c5a0883a535066161d3dd0 *R-ex/isWithinInterval.R
fcee24b1d24eabef157754329fd45f50 *R-ex/otherStrand.R
b659ec91ee4794f8fa2aa28c9a60ced9 *R-ex/plotAlongChrom.R
b235f7f13b898444ebaa9de1494a8467 *R-ex/plotAlongChrom2.R
d92dc0a0b5bee4502cb2c41b12b34a06 *R-ex/posMin.R
ed0ded9be0ad53ac660140edddf06bf0 *R-ex/qualityReport.R
a8432e965fa77553246b5de8e508605d *R-ex/scoreSegments.R
c85bfca5ddf2b7f0cc6b6a06b3f68c07 *R/all.rda
0cfa4ea46800ef5aec44f7ce7a322e8a *R/tilingArray
7bfd25a5faeeaa97428e7a8b3137fc16 *chtml/tilingArray.chm
6224d2e0085115b6a67b589431744e28 *doc/findsegments.Rnw
453fc8ca5fb4ea41fd8e6fbe4168543c *doc/findsegments.pdf
3a7e7d27c0fc49748d89e08c1c93947b *doc/index.html
f9dc992f0c638da2be46dcdee8a17d20 *doc/workflowOverview.Rnw
51b8ee119b138280e56b84652276ef06 *doc/workflowOverview.pdf
8bc7674c1824336ceeed61deb69dfeb7 *help/AnIndex
c8ce24b984a648da5136d1f66a059a74 *help/costMatrix
9084be5261f6f2399f8fb45ebb3c4c82 *help/findsegments
f82da95537396427dd11eeb0aea7094c *help/getAttributeField
bbab6b4bd812fbbd5c0323d9b88cc599 *help/isWithinInterval
2eae110f9bca57042e78adb93ec9d251 *help/otherStrand
03d7148a4182b25e154a915376bb2d60 *help/plotAlongChrom
559b01e075a52012f6cfa9662f37108d *help/plotAlongChrom2
8ab687a541f43bf4b220f8bef4a80c53 *help/posMin
1eed085de56c18516f611a8c2776b04c *help/qualityReport
2220c4441c2d6c26fa6895f877fde72f *help/scoreSegments
11d07972950d4ba4286590d8e6aa4ff6 *html/00Index.html
a24d5c792de4720a9505f31303f28157 *html/costMatrix.html
6cfd706d7e900feebe09234a0fd6b731 *html/findsegments.html
5028568d5f6ec003aa56e5976eee4195 *html/getAttributeField.html
74f03873e23165b0a7e5028b57594e04 *html/isWithinInterval.html
7d4b25a44eb30f76fc05ca251af44e76 *html/otherStrand.html
29fb21ec80639aa2b8b4a067d8d5440c *html/plotAlongChrom.html
19bfae405aad6c7d2ceee1f458fff484 *html/plotAlongChrom2.html
14368df2c675541865c7bfc820286f65 *html/posMin.html
26cf011e06b91f95e4e7a0369a7dd9b1 *html/qualityReport.html
401df375bb952c009b304e2c7bb69787 *html/scoreSegments.html
6a55f69ac452cfecc05d8d14c6fb18c5 *latex/costMatrix.tex
86df4df4379caa1978d27cee1b0ba1ca *latex/findsegments.tex
1e43deac1bc21364f95415f0294c96ed *latex/getAttributeField.tex
03b8c6824d8771483486534b4000ef17 *latex/isWithinInterval.tex
212f56939a89d539dac66a50827e1108 *latex/otherStrand.tex
33924a425660e6d583ae829c6d0e577f *latex/plotAlongChrom.tex
7f87eabe30f98462bed1a0238d3a981a *latex/plotAlongChrom2.tex
b6b676871536c16bdc87eb6312b097ff *latex/posMin.tex
570bb926f02e8e88ce715b0014b46740 *latex/qualityReport.tex
c7ac486d256d8aa36ff04fc58721c4e3 *latex/scoreSegments.tex
4b212d4a7b629b4c73fa04a2f6739c59 *libs/tilingArray.dll
24634fd175971e4fd6b3f8f500bffa31 *man/tilingArray.Rd.gz
0deed8defbbbae269e6d87728899a2dd *scripts/Figures/INDEX
1170cc3affabdeee88ff841b3b61730a *scripts/Figures/fig_norm.R
2db95e8e1a9267b7a1188556b2013b33 *scripts/antiSense.R
8192a11182edf259444f3d046ccb8d29 *scripts/blast_Spombe.R
737de6d9b0aa97b5fe80564d2a97c0a7 *scripts/blast_threefunghi.R
f3979d550aa8f41fb73e5a8eafd59c56 *scripts/calcThreshold.R
6d69420f772f04a2a700393a93eae2a4 *scripts/categorizeSegments.R
e8cc0bf00d6b79d4ae2b27c2de7f7d2c *scripts/doQualityReport.R
4f05c52fd53db485e1010a06200950db *scripts/findORF.R
e5982a11cb7b6254197514ee437203b9 *scripts/geneDensity.R
4d1ce73e0fba0ecf3cbec9b9ed8d67fb *scripts/makeProbeAnno.Rnw
c4c11fe18864865dd92bf10d7d6b90df *scripts/probeSignal.R
90b7d30b35a10aaece7c7a00aea50f88 *scripts/readSegments.R
6f6d8abdf8d656068604257dc52f558e *scripts/readcels.R
5b84e3accc49c72e53279487abfa05bd *scripts/scoreSegments.R
cb788a5fba0e683e63a2a5cc52851e93 *scripts/segConservation.R
5a2f71575edca3f89a372e1234efcdc5 *scripts/segSequencesWrite.R
b489f3cb57fd3c93fcec128e469df226 *scripts/segVariance.Rnw
482a529fd96b5796fc08adc1558799a9 *scripts/segment.R
ec09638e01e5fd3d07353e9247193245 *scripts/segmentDuplication.R
c06d90770e41eb37ea3834ce3b396e27 *scripts/segmentRand.R
383f91515f216d16eeda5834a13f52e0 *scripts/tableSegments.R
3bd8615e8ca00b8e5a8f5b0e9eb93396 *scripts/utrmap.R
c2b480a322021bdd4c7b4d547ac64dbb *scripts/viewAllSegs.R
d9ac61bb3d2b9c8c9878e4d1ead84f8b *scripts/viewSegmentation.R
f43a9909557b3dc28afd79da517544ae *scripts/weakProbesCluster.R
