Calibintstat-class          package:mscalib          R Documentation

_C_l_a_s_s "_C_a_l_i_b_i_n_t_s_t_a_t" : _I_n_t_e_r_n_a_l _c_a_l_i_b_r_a_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     Calibration coefficients obtained by internal calibration.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by the call of the function
     'getintcalib-methods'.

_S_l_o_t_s:

     '_n_r_m_a_t_c_h': Object of class '"numeric"' : number of peaks matched
          to theoretical masses 

     '_p_p_m': Object of class '"logical"': the mass measurement error is
          either described in parts per million (ppm=TRUE) or in
          arbitrary units (FALSE)

     '_e_r_r_o_r': Object of class '"numeric"': Size of the search window. 

     '_l_m_m_o_d': Object of class '"lmNULL"': either object of class 'lm'
          or 'NULL'

     '_i_n_f_o': Object of class '"character"': identifier 

     '_t_c_o_o_r': Object of class '"numeric"':  target coordinates

     '_C_o_e_f_f._I_n_t_e_r_c_e_p_t': Object of class '"numeric"' intercept
          coefficient 

     '_C_o_e_f_f._S_l_o_p_e': Object of class '"numeric"' slope coefficient 

     '_l_e_n_g_t_h_m_v': Object of class '"numeric"' length of 'Massvector' 

     '_q_u_a_l_i_t_y': Object of class '"numeric"': calibration model quality
          index (developmental)

_E_x_t_e_n_d_s:

     Class '"Calibstat"', directly.

_M_e_t_h_o_d_s:

     _a_p_p_l_y_c_a_l_i_b 'signature(obx = "Massvector", oby = "Calibintstat")':
          applys 'Calibintstat' model to 'Massvector' 

     _a_p_p_l_y_c_a_l_i_b 'signature(obx = "Massvectorlist", oby =
          "Calibintstat")': ... 

     _a_p_p_l_y_c_a_l_i_b 'signature(obx = "Calibintstat", oby = "Massvector")':
          ... 

     _a_p_p_l_y_c_a_l_i_b 'signature(obx = "Calibintstat", oby =
          "Massvectorlist")': ... 

     _c_o_e_r_c_e<- 'signature(from = "Calibintstat", to = "list")': ... 

     _c_o_e_r_c_e 'signature(from = "Calibintstat", to = "numeric")': ... 

     _c_o_e_r_c_e 'signature(from = "Calibintstat", to = "list")': ... 

     _p_l_o_t 'signature(x = "Calibintstat", y = "missing")': ... 

     _s_h_o_w 'signature(object = "Calibintstat")': ... 

_N_o_t_e:

_A_u_t_h_o_r(_s):

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

     'Calibstat-class','Calibprestat-class'

_E_x_a_m_p_l_e_s:

     ##---- Should be DIRECTLY executable !! ----

