Calibextstat-class          package:mscalib          R Documentation

_C_l_a_s_s "_C_a_l_i_b_e_x_t_s_t_a_t"

_D_e_s_c_r_i_p_t_i_o_n:

     Extends class  'Calibstat-class'. Implements modelling of the mass
     measurement error using 'smooth.spline'.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     An object of this class is obtained by the call to the function
     'getextcalib-methods'

_S_l_o_t_s:

     '_n_r_m_a_t_c_h': Object of class '"numeric"' - nr of peaks matched

     '_p_p_m': Object of class '"logical"' - TRUE - If mass measurement
          error is specified in parts per million.

     '_e_r_r_o_r': Object of class '"numeric"' - size of the error window
          (search window for matching peaks)

     '_s_p_l': Object of class 'smooth.spline' 

     '_m_e_r_r_o_r': Object of class '"numeric"' observed residuals
          (experimental mass - theoretical mass)

     '_t_h_e_o': Object of class '"numeric"' theoretical mass at which
          match was observed

     '_i_n_f_o': Object of class '"character"' identifier 

     '_t_c_o_o_r': Object of class '"numeric"' target coordinates

     '_C_o_e_f_f._I_n_t_e_r_c_e_p_t': Object of class '"numeric"' (not in use here)

     '_C_o_e_f_f._S_l_o_p_e': Object of class '"numeric"' (not in use here) 

     '_l_e_n_g_t_h_m_v': Object of class '"numeric"' nr of peak-lists matched 

     '_q_u_a_l_i_t_y': Object of class '"numeric"'  error model quality index

_E_x_t_e_n_d_s:

     Class '"Calibstat"', directly.

_M_e_t_h_o_d_s:

     _a_p_p_l_y_c_a_l_i_b 'signature(obx = "Massvector", oby = "Calibextstat")':
          ... 

     _a_p_p_l_y_c_a_l_i_b 'signature(obx = "Massvectorlist", oby =
          "Calibextstat")': ... 

     _a_p_p_l_y_c_a_l_i_b 'signature(obx = "Calibextstat", oby = "Massvector")':
          ... 

     _p_l_o_t 'signature(x = "Calibextstat", y = "missing")': ... 

     _s_h_o_w 'signature(object = "Calibextstat")': ... 

_N_o_t_e:

_A_u_t_h_o_r(_s):

     W.Wolski

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

     'Calibstat-class', 'smooth.spline'

_E_x_a_m_p_l_e_s:

