Entry: CSKrig-class
Aliases: CSKrig-class image,CSKrig-method plot,CSKrig,missing-method
Keywords: classes
Description: Class "CSKrig"
URL: ../../../library/mscalib/html/CSKrig-class.html

Entry: CSTps-methods
Aliases: CSTps-methods CSTps,Caliblist-method
Keywords: methods misc
Description: Thin plate spline from Caliblist
URL: ../../../library/mscalib/html/CSTps-methods.html

Entry: CSsurf-class
Aliases: CSsurf-class image,CSsurf-method plot,CSsurf,missing-method
Keywords: classes
Description: Class "CSsurf"
URL: ../../../library/mscalib/html/CSsurf-class.html

Entry: CSsurf.gls-methods
Aliases: CSsurf.gls-methods CSsurf.gls,Caliblist-method
Keywords: methods misc
Description: Spatial calibration model for sample support
URL: ../../../library/mscalib/html/CSsurf.gls-methods.html

Entry: CSsurf.ls-methods
Aliases: CSsurf.ls-methods CSsurf.ls,Caliblist-method
Keywords: methods misc
Description: Obtains calibration model for mass spectrometric support.
URL: ../../../library/mscalib/html/CSsurf.ls-methods.html

Entry: CalibPRstat-class
Aliases: CalibPRstat-class
Keywords: classes
Description: Class "CalibPRstat" - Testing
URL: ../../../library/mscalib/html/CalibPRstat-class.html

Entry: Calibextstat-class
Aliases: Calibextstat-class applycalib,Massvector,Calibextstat-method applycalib,Massvectorlist,Calibextstat-method applycalib,Calibextstat,Massvector-method plot,Calibextstat,missing-method show,Calibextstat-method
Keywords: classes
Description: Class "Calibextstat"
URL: ../../../library/mscalib/html/Calibextstat-class.html

Entry: Calibintlist-class
Aliases: Calibintlist-class applycalib,Massvectorlist,Calibintlist-method coerce<-,Calibintlist,data.frame-method coerce,Calibintlist,data.frame-method
Keywords: classes
Description: Class "Calibintlist"
URL: ../../../library/mscalib/html/Calibintlist-class.html

Entry: Calibintstat-class
Aliases: Calibintstat-class applycalib,Massvector,Calibintstat-method applycalib,Massvectorlist,Calibintstat-method applycalib,Calibintstat,Massvector-method applycalib,Calibintstat,Massvectorlist-method coerce<-,Calibintstat,list-method coerce,Calibintstat,numeric-method coerce,Calibintstat,list-method plot,Calibintstat,missing-method show,Calibintstat-method
Keywords: classes
Description: Class "Calibintstat" : Internal calibration
URL: ../../../library/mscalib/html/Calibintstat-class.html

Entry: Caliblist-class
Aliases: Caliblist-class [,Caliblist-method [[<-,Caliblist-method coerce,Caliblist,matrix-method coerce,Caliblist,data.frame-method show,Caliblist-method summary,Caliblist-method
Keywords: classes
Description: Class "Caliblist"
URL: ../../../library/mscalib/html/Caliblist-class.html

Entry: Calibprelist-class
Aliases: Calibprelist-class applycalib,Massvectorlist,Calibprelist-method
Keywords: classes
Description: Class "Calibprelist" - peptide rule based calibration
URL: ../../../library/mscalib/html/Calibprelist-class.html

Entry: Calibprestat-class
Aliases: Calibprestat-class applycalib,Massvector,Calibprestat-method applycalib,Massvectorlist,Calibprestat-method applycalib,Calibprestat,Massvector-method coerce,Calibprestat,numeric-method coerce,Calibprestat,list-method plot,Calibprestat,missing-method show,Calibprestat-method
Keywords: classes
Description: Class "Calibprestat": peptide rule based calibration
URL: ../../../library/mscalib/html/Calibprestat-class.html

Entry: Calibstat-class
Aliases: Calibstat-class coerce,Calibstat,numeric-method coerce,Calibstat,list-method coerce,Calibstat,data.frame-method show,Calibstat-method summary,Calibstat-method
Keywords: classes
Description: Class "Calibstat" -- Generic calibration object class
URL: ../../../library/mscalib/html/Calibstat-class.html

Entry: DATA
Aliases: cal2 cal
Keywords: datasets
Description: Tryptic autoproteolysis masses
URL: ../../../library/mscalib/html/DATA.html

Entry: DATA2
Aliases: samples NPPG
Keywords: datasets
Description: Mass Spectra of protein and ppg samples
URL: ../../../library/mscalib/html/DATA2.html

Entry: Surf-class
Aliases: Surf-class applycalib,Surf,Massvector-method applycalib,Surf,Massvectorlist-method applycalib,Massvector,Surf-method applycalib,Massvectorlist,Surf-method
Keywords: classes
Description: Class "Surf"
URL: ../../../library/mscalib/html/Surf-class.html

Entry: correctinternal-methods
Aliases: correctinternal-methods correctinternal,Massvector,Massvector-method correctinternal,Massvectorlist,Massvector-method
Keywords: methods misc
Description: Corrects the masses using internal calibration
URL: ../../../library/mscalib/html/correctinternal-methods.html

Entry: diffFilter-methods
Aliases: diffFilter-methods diffFilter,Massvectorlist,Massvector-method diffFilter,Massvector,Massvector-method
Keywords: methods misc
Description: Remove mass differences
URL: ../../../library/mscalib/html/diffFilter-methods.html

Entry: getLpepcalib-methods
Aliases: getLpepcalib-methods getLpepcalib,Massvectorlist-method
Keywords: methods misc
Description: Peptide role based calibration (preliminary) for aligned Massvectorlists
URL: ../../../library/mscalib/html/getLpepcalib-methods.html

Entry: getPPGmasses
Aliases: getPPGmasses
Keywords: misc
Description: Compute poly-(propylene glycol) masses
URL: ../../../library/mscalib/html/getPPGmasses.html

Entry: getPRcalib-methods
Aliases: getPRcalib-methods getPRcalib,Massvector-method getPRcalib,Massvectorlist-method
Keywords: methods misc
Description: ~~ Methods for Function getPRcalib in Package 'mscalib' ~~
URL: ../../../library/mscalib/html/getPRcalib-methods.html

Entry: getdiff-methods
Aliases: getdiff-methods getdiff,Massvectorlist-method getdiff,Massvector-method
Keywords: methods misc
Description: Computes all mass differences in and massvectorlist.
URL: ../../../library/mscalib/html/getdiff-methods.html

Entry: getextcalib-methods
Aliases: getextcalib-methods getextcalib,Massvectorlist,missing-method getextcalib,Massvectorlist,Massvector-method getextcalib,Massvector,Massvector-method
Keywords: methods misc
Description: Obtain external calibration model from poly-mer samples
URL: ../../../library/mscalib/html/getextcalib-methods.html

Entry: getglobalcalib-methods
Aliases: getglobalcalib-methods getglobalcalib,Massvectorlist,NULL-method getglobalcalib,Massvectorlist,Massvector-method
Keywords: methods misc
Description: Obtain calibration coefficients by internal global calibration
URL: ../../../library/mscalib/html/getglobalcalib-methods.html

Entry: getintcalib-methods
Aliases: getintcalib-methods getintcalib,Massvector,Massvector-method getintcalib,Massvectorlist,Massvector-method
Keywords: methods misc
Description: Obtain calibration coefficients using internal calibration
URL: ../../../library/mscalib/html/getintcalib-methods.html

Entry: getmstCalib-methods
Aliases: getmstCalib-methods getmstCalib,Massvectorlist-method
Keywords: methods misc
Description: ~~ Methods for Function getmstCalib in Package 'mscalib' ~~
URL: ../../../library/mscalib/html/getmstCalib-methods.html

Entry: getpepcalib-methods
Aliases: getpepcalib-methods getpepcalib,numeric-method getpepcalib,Massvector-method getpepcalib,Massvectorlist-method
Keywords: methods misc
Description: Obtain calibration coefficients. (preliminary)
URL: ../../../library/mscalib/html/getpepcalib-methods.html

Entry: getprecalib-methods
Aliases: getprecalib-methods getprecalib,numeric-method getprecalib,Massvector-method getprecalib,Massvectorlist-method
Keywords: methods misc
Description: Wool Smilansky peptide rule based calibration
URL: ../../../library/mscalib/html/getprecalib-methods.html

Entry: globalcalib-methods
Aliases: globalcalib-methods globalcalib,Massvectorlist,Massvector-method
Keywords: methods misc
Description: Calibrate Massvectorlist by internal global calibration
URL: ../../../library/mscalib/html/globalcalib-methods.html

Entry: massFilter-methods
Aliases: massFilter-methods massFilter,Massvector-method
Keywords: methods misc
Description: Methods for Function massFilter in Package 'mscalib' (preliminary)
URL: ../../../library/mscalib/html/massFilter-methods.html

Entry: mstCalib-class
Aliases: mstCalib-class thebigcalib,mstCalib-method
Keywords: classes
Description: Class "mstCalib"
URL: ../../../library/mscalib/html/mstCalib-class.html

Entry: pepFilter-methods
Aliases: pepFilter-methods pepFilter,Massvector-method pepFilter,Massvectorlist-method
Keywords: methods misc
Description: Methods for Function pepFilter in Package 'mscalib' (preliminary)
URL: ../../../library/mscalib/html/pepFilter-methods.html

Entry: peproleFilter-methods
Aliases: peproleFilter-methods peproleFilter,Massvectorlist-method peproleFilter,Massvector-method
Keywords: methods misc
Description: Methods for Function peproleFilter in Package 'mscalib' (prliminary)
URL: ../../../library/mscalib/html/peproleFilter-methods.html

Entry: residuals-methods
Aliases: residuals-methods residuals,ANY-method residuals,Massvector-method residuals,Massvectorlist-method
Keywords: methods misc
Description: ~~ Methods for Function residuals in Package 'mscalib' ~~
URL: ../../../library/mscalib/html/residuals-methods.html

Entry: undocumented
Aliases: applycalib applycalibCS applyextcalib applyintcalib correctinternal CSsurf.gls CSsurf.ls CSTps diffFilter distance distance2 FullWidthatHalfMaximum getdiff getextcalib getextcalibInt getextcalibMV getglobalcalib getintcalib getintcalibInt getLpepcalib getmstCalib getpepcalib getPRcalib getprecalib getXY globalcalib intglobcalib massdist massFilter massFilterI maxSTCalib pepFilter peproleFilter predict.trgls recalib refinecalibTps thebigcalib wsdist wsdist2 wsFilter wsiFilter Krig-class lmNULL-class mtrls-class NULLKrig-class smooth.spline-class trgls-class trls-class
Keywords: internal
Description: Undocumented functions
URL: ../../../library/mscalib/html/undocument-internal.html

Entry: wsFilter-methods
Aliases: wsFilter-methods wsFilter,Massvector-method wsFilter,Massvectorlist-method
Keywords: methods misc
Description: Filtering of nonpeptide peaks
URL: ../../../library/mscalib/html/wsFilter-methods.html
