Entry: List-class
Aliases: List-class [,List-method [<-,List-method [[<-,List-method coerce,List,list-method coerce<-,List,list-method
Keywords: classes
Description: Class "List"
URL: ../../../library/msbase/html/List.html

Entry: Massvector-class
Aliases: Massvector-class [,Massvector-method coerce,Massvector,numeric-method coerce,Massvector,list-method coerce,Massvector,data.frame-method image,Massvector-method hist,Massvector-method initialize,Massvector-method length,Massvector-method mvscale,Massvector-method plot,Massvector,Massvector-method plot,Massvector,missing-method pep.plot,Massvector,missing-method readBruker,Massvector-method readMV,Massvector,character-method show,Massvector-method summary,Massvector-method writeMV,Massvector,character-method
Keywords: classes
Description: Class "Massvector"
URL: ../../../library/msbase/html/Massvector-class.html

Entry: Massvectorlist-class
Aliases: Massvectorlist-class [,Massvectorlist-method [[<-,Massvectorlist-method [<-,Massvectorlist-method coerce,Massvectorlist,matrix-method coerce,Massvectorlist,data.frame-method col.plot,Massvectorlist-method hist,Massvectorlist-method initialize,Massvectorlist-method mvscale,Massvectorlist-method pep.plot,Massvectorlist,missing-method plot,Massvectorlist,missing-method readBruker,Massvectorlist-method readMV,Massvectorlist,character-method show,Massvectorlist-method unlist,Massvectorlist-method writeMV,Massvectorlist,character-method
Keywords: classes
Description: Class "Massvectorlist"
URL: ../../../library/msbase/html/Massvectorlist-class.html

Entry: Mlist-class
Aliases: Mlist-class image,Mlist-method names,Mlist-method names<-,Mlist-method subset,Mlist-method [[<-,Mlist-method
Keywords: classes
Description: Class "Mlist"
URL: ../../../library/msbase/html/Mlist-class.html

Entry: ROCDATA
Aliases: pmf.binary pmf.intensity msms.binary msms.intensity
Keywords: datasets
Description: Transformation and other factors of the pairwise peak-lists Comparsion Process
URL: ../../../library/msbase/html/ROCDATA.html

Entry: cals-methods
Aliases: cals-methods cals,numeric,numeric-method cals,Massvector,Massvector-method cals,Massvectorlist,Massvector-method cals,Massvectorlist,NULL-method
Keywords: methods
Description: Similarity by user defined function
URL: ../../../library/msbase/html/cals-methods.html

Entry: calssim
Aliases: calssim calsrange
Keywords: misc
Description: Similarity function for comparison of two peak-lists.
URL: ../../../library/msbase/html/calssim.html

Entry: fbinary-methods
Aliases: fbinary-methods fbinary,numeric,numeric-method fbinary,Massvector,Massvector-method fbinary,Massvectorlist,Massvector-method fbinary,Massvectorlist,NULL-method fbinary,list,NULL-method
Keywords: methods
Description: Binary measures for pairwise peak-list comparison
URL: ../../../library/msbase/html/fbinary-methods.html

Entry: fcor-methods
Aliases: fcor-methods fcor,Massvector,Massvector-method fcor,Massvectorlist,Massvector-method fcor,Massvectorlist,NULL-method
Keywords: methods
Description: Similarity measures for peak-list comparison
URL: ../../../library/msbase/html/fcor-methods.html

Entry: fdist-methods
Aliases: fdist-methods fdist,Massvector,Massvector-method fdist,Massvectorlist,Massvector-method fdist,Massvectorlist,NULL-method
Keywords: methods
Description: Euclidean or Manhattan distance for peak-list comparison
URL: ../../../library/msbase/html/fdist-methods.html

Entry: finterS-methods
Aliases: finterS-methods finterS,numeric,numeric-method finterS,Massvector,Massvector-method finterS,Massvectorlist,Massvector-method
Keywords: methods manip
Description: Intersection of two vectors, Massvectors
URL: ../../../library/msbase/html/finterS-methods.html

Entry: fintersect-methods
Aliases: fintersect-methods fintersect,numeric,numeric-method fintersect,Massvector,Massvector-method fintersect,Massvectorlist,Massvector-method
Keywords: methods manip
Description: Intersection of two vectors, Massvectors
URL: ../../../library/msbase/html/fintersect-methods.html

Entry: fis.element-methods
Aliases: fis.element-methods fis.element,numeric,numeric-method fis.element,Massvector,Massvector-method
Keywords: methods manip
Description: Performs *set* membership on two Massvectors
URL: ../../../library/msbase/html/fis.element-methods.html

Entry: fmatch-methods
Aliases: fmatch-methods fmatch,numeric,numeric-method fmatch,Massvector,Massvector-method
Keywords: methods manip
Description: Index of matching peaks
URL: ../../../library/msbase/html/fmatch-methods.html

Entry: fmatchall-methods
Aliases: fmatchall-methods fmatchall,numeric,numeric-method fmatchall,Massvector,Massvector-method
Keywords: methods manip
Description: Index of matching and not-matching peaks
URL: ../../../library/msbase/html/fmatchall-methods.html

Entry: fsetdiff-methods
Aliases: fsetdiff-methods fsetdiff,numeric,numeric-method fsetdiff,Massvector,Massvector-method fsetdiff,Massvectorlist,Massvector-method
Keywords: methods manip
Description: difference
URL: ../../../library/msbase/html/fsetdiff-methods.html

Entry: fsetequal-methods
Aliases: fsetequal-methods fsetequal,numeric,numeric-method fsetequal,Massvector,Massvector-method
Keywords: methods manip
Description: Performs *set* equality on two Massvectors
URL: ../../../library/msbase/html/fsetequal-methods.html

Entry: funion-methods
Aliases: funion-methods funion,Massvector,Massvector-method funion,numeric,numeric-method
Keywords: methods manip
Description: Union of two Massvectors
URL: ../../../library/msbase/html/funion-methods.html

Entry: gamasses-methods
Aliases: gamasses-methods gamasses,Massvector-method gamasses,Massvectorlist-method
Keywords: methods misc
Description: Determines clusters of masses in an Massvector
URL: ../../../library/msbase/html/gamasses-methods.html

Entry: listdist-methods
Aliases: listdist-methods listdist,list-method
Keywords: methods
Description: compute object of class "dist" from list.
URL: ../../../library/msbase/html/listdist-methods.html

Entry: nrmatch-methods
Aliases: nrmatch-methods nrmatch,numeric,numeric-method nrmatch,Massvector,Massvector-method nrmatch,Massvectorlist,Massvector-method nrmatch,Massvectorlist,NULL-method
Keywords: methods misc
Description: Number of matching peaks
URL: ../../../library/msbase/html/nrmatch-methods.html

Entry: numeric-class
Aliases: numeric-class coerce,ANY,numeric-method fm,numeric-method assym,numeric-method hg,numeric-method rmi,numeric-method
Keywords: classes
Description: Class "numeric"
URL: ../../../library/msbase/html/numeric-class.html

Entry: pldata
Aliases: pldata
Keywords: datasets
Description: 18 Peak-lists
URL: ../../../library/msbase/html/pldata.html

Entry: undocumented
Aliases: assym c.Massvectorlist c.mdist coerce,matrix,Massvector-method col.plot fbinary fcor fdist fintersect fis.element fm dumm fmatch fmatchall fsetdiff fsetequal funion gamasses getcoorBruker getCoorNames hg imaget listdist mvmeannorm mvmeannormtmp mvscale mvscaletmp nrmatch peaks peaks.default pep.plot rbind.Massvector readBruker readMV rmi writeMV c.Massvector cals calsdistN finterS flFilter gelimage myimage2
Keywords: internal
Description: Undocumented functions
URL: ../../../library/msbase/html/undocument-internal.html
